Geobacillus genomosp. 3: M493_14155
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Entry
M493_14155 CDS
T02798
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gjf
Geobacillus genomosp. 3
Pathway
gjf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M493_14155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gjf03400
]
M493_14155
Enzymes [BR:
gjf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
M493_14155
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
M493_14155
DNA repair and recombination proteins [BR:
gjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M493_14155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
DZR_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AGT33070
UniProt:
S5ZFE0
LinkDB
All DBs
Position
complement(2639032..2639856)
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AA seq
274 aa
AA seq
DB search
MPELPEVETIRRTLLPLVVGKTIADVRVFWSNIIRHPQDPETFAARLAGQTVRGIERRGK
FLKFLLDRDMLVSHLRMEGRYTVANAHEPLDPHTHVVFCFTDGNELRYRDVRKFGTMHVY
PKEEGDRQPPLDQLGPEPLSPAFSPAILAERAAKTKRAVKALLLDQTVVAGFGNIYVDES
LFRAGILPDRPAASLTREEIKRLHEQMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHSLF
VYGRKGEPCKRCGAPIEKTVVAGRGTHYCPRCQR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaggtggaaacaatccgccgcacgctcttgccgcttgtcgtcggg
aaaacgattgcggatgttcgtgttttttggtcgaacatcatccgtcacccgcaagacccg
gagacgtttgccgccaggctcgccgggcagacggtgcgcggcatcgagcggcgcgggaaa
tttttgaagtttttgcttgaccgggatatgctcgtctcccatttgcgcatggaagggcgc
tatactgtcgccaatgcacacgaaccgctcgatccgcatacgcatgtcgtgttttgtttt
actgacggcaacgaactccgctaccgcgatgtgcgcaagtttgggacgatgcatgtgtat
ccgaaggaggagggagaccgccaaccgccgcttgatcaattagggccggagccgctttct
ccggcgttttccccggccatattggccgagcgggccgcgaaaacgaagcgggccgtaaaa
gcgttgctgcttgaccaaacagtcgtcgccgggtttggcaacatttacgttgacgaatcg
ctgtttcgcgccggcattcttcccgaccggccggctgcttcactgacaagagaagaaatc
aaacggctgcatgaacaaatggtcgcgaccatcggggaggcggtcatgaaagggggaagc
acggtgcgcacatatgtgaacacacaaggggaagcgggcacgtttcaacatagtttgttc
gtatacggccgcaaaggggagccgtgtaaacgatgcggcgccccgattgaaaaaacggtt
gtcgccggccgtggcacgcactattgtccgcgctgccagcggtag
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