Gordonia jinghuaiqii: H1R19_05200
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Entry
H1R19_05200 CDS
T07538
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gji
Gordonia jinghuaiqii
Pathway
gji03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gji00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H1R19_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gji03021
]
H1R19_05200
03400 DNA repair and recombination proteins [BR:
gji03400
]
H1R19_05200
Enzymes [BR:
gji01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H1R19_05200
Transcription machinery [BR:
gji03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H1R19_05200
DNA repair and recombination proteins [BR:
gji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H1R19_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QMT02552
UniProt:
A0A7D7R485
LinkDB
All DBs
Position
1180882..1184838
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMQVEKKNVADQRDADLNERQQKLEQD
LAELEAEGAKADVRRKVRDGAEREMRRMRDSAQRELDGLDEIWDKFVKLSLGDLIIDEKL
YRQLEERYGEYFQGSMGAEAIKKLLETFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLQEGAIGEYT
PATDNDVERGVYSTPSEAIMAVDRGALTVRSKIKVRLTDQRPPADIEAEQFPDGWKFGQP
WDIETTLGRVMFNELLPIQYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
HWATRSGVTISMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDSLVEIWKQA
TEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGITTTI
AEKQADGTLIRDAHVETSTYARTLASDALDADGNVIVERGHDLGDPTIEALLAAGITQVK
VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITLIPDDGSEEVVIDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRKVVTEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNEYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggcctggccacggccgacgacatc
cacaactggtcatacggcgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggccccacccgtgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctggccgcaccg
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcacggcggtcgac
gacgagcttcgccacaacgagctctcgaccctcgaggccgagatgcaggtggagaagaag
aacgtcgccgatcagcgcgacgccgatctgaacgagcgtcagcagaagctcgagcaggat
ctcgccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgtgacggt
gccgagcgcgagatgcgtcgtatgcgtgattccgcgcagcgcgagctcgacggtctcgac
gagatctgggacaagttcgtcaagctctcgctgggcgacctgatcatcgacgagaagctg
taccgccagctcgaagagcgctacggcgagtacttccagggttcgatgggtgccgaggcg
atcaagaagctcctcgagaccttcgacatcgatgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgtgcgctcaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgccgtgccggtgatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgtctgatcgatctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggacgtcgtggacgtccggtcaccggaccgggtaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgtggtctgccgaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccaggctcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgt
ccggccgtgtgggacgtcctcgaagaggtcatctccgagcacccggtgctgctgaaccgt
gcaccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtggagggcaag
gcaattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggctcgcatcctgatgctg
tcgagcaacaacatcctgtcgccggcatcgggccgcccgctggccatgccgcgtctggac
atggtgaccggtctgtactacctgaccaccctccaggagggtgcgatcggcgagtacacg
ccggcaaccgacaacgacgtcgagcgcggtgtctactcgaccccgtcggaggccatcatg
gccgtcgaccgtggcgcgttgaccgtgcgttcgaagatcaaggtgcgtctgaccgatcag
cgtccgccggccgacatcgaggccgagcagttcccggacggctggaagttcggtcagccg
tgggacatcgagacgaccctgggtcgcgtgatgttcaacgagctgctgccgatccagtac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgttacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgtcggcttc
cactgggccacccgttcgggcgtcaccatctcgatggccgacgtgctggtgccgccgcag
aaggcggagatcctcgacaagtacgaggagcgggccgacggtctggagcgcaagttccag
cgtggtgccctcaccccggacgagcgtcgcgattcgctggtcgagatctggaagcaggcg
accgaagaggtcggtgcggccatggaggcgcactacccggatgacaacccgatcccgatg
atcgtcaagtcgggtgcggcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcctcgttccgc
gagggcctgaccgtcgccgagtacttcatcaacacgcacggtgcccgtaagggtctggcg
gacacggcacttcgtaccgctgactcgggttacctgacccgtcgtctggtggacgtcagc
caggacgtcatcgtgcgcgagaccgattgcggtaccgagcgcggcatcaccacgacgatc
gccgagaagcaggccgacggcacgctcatccgcgacgcgcatgtcgagacctcgacctac
gcccgcaccttggcgtccgacgccctcgacgccgacggcaacgtcatcgtcgagcgcggt
cacgacctgggcgacccgaccatcgaggctctcctcgctgccgggatcacgcaggtcaag
gtccgttcggtcctgacctgtgggaccggcaccggcgtgtgcgccatgtgttacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccatcagggtggcgtcggc
gacgacatcaccggtggtctgccgcgcgtccaggagctcttcgaggctcgcgtccccaag
ggcgtcgcgccgatcgcggaggtctcgggccgggtgcgtctcgaggacgacgaccgcttc
tacaagatcaccctcatcccggacgacggttccgaagaggttgtcatcgacaagatctcg
aagcgtcagcgtctgcgcgtgttcaagcacgacgacggttccgagcggctgttggccgac
ggtgaccacgtcgaggtcggccagcagctcatggagggctcggccaacccgcacgaggtg
cttcgcgtgatgggtccccgtcaggtgcagatccacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgtcagatg
ctgcgtcgcgtgacgatcatcgatcacggttcgaccgagttcctgcccggttcgctcgtg
gagcgcgccgagttcgaggcggccaaccgtaaggtcgtgaccgagggtggcgagcccgcc
gccggacgtccggtgctgatgggtatcaccaaggcctccctcgcaaccgagtcgtggctg
tcggcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcagcgatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggcaagttgatcccggccggt
accggtatcaaccgttaccgcaacatccaggttcagccgaccgaagaggcacgtgccgcg
gcgtacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggtgccgctggacgactacggtttctccaacgaataccggtag
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