Gordonia jinghuaiqii: H1R19_09555
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Entry
H1R19_09555 CDS
T07538
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gji
Gordonia jinghuaiqii
Pathway
gji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H1R19_09555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gji03019
]
H1R19_09555
03009 Ribosome biogenesis [BR:
gji03009
]
H1R19_09555
Enzymes [BR:
gji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H1R19_09555
Messenger RNA biogenesis [BR:
gji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H1R19_09555
Ribosome biogenesis [BR:
gji03009
]
Prokaryotic type
rRNA helicases
H1R19_09555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
QMT03312
UniProt:
A0A7D7R574
LinkDB
All DBs
Position
2142060..2143841
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AA seq
593 aa
AA seq
DB search
MSTSDQGEHSTPADPAATAPSGADSAGGSFDDLDIHPKVRAAITDVGYETPSPIQAATIP
PLMAGRDVVGLAQTGTGKTAAFAIPILSRIDTSARTPQALILAPTRELALQVAEAFARYS
SHMPDVKVLPIYGGQAYGVQLAGLRRGAQVIVGTPGRVIDHLDRKTLDISGLEFLVLDEA
DEMLTMGFAEDVERILAETPDTKQVALFSATMPSAIRRLAQRYLNSPQEIAVKSKTATAQ
NITQRYLQVSHQRKLDALTRFLEVETFDGMIVFVRTKQATEELAEKLRSRGFSAVAINGD
LAQAQRERTINQLKNGTIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGR
AGRSGNALLFVSPRERHLLRAIERATRQTLTEIGLPSVDDVNSQRVAKFADSITQNLSSD
NLDLFRGLIENYARDNDVAMADIAAALALETRDGGFLMTPDPPQSERRPEQDRAPRRSGG
NFATYRIAVGRKHKVSPGAIVGAIANEGGLSRGDFGNISIRDDFSLVELPDDLDNETLSN
LRHTKIGKTPIDIRKDMGAPRTRGGGGPKRGGGQGGNWGKRPSPRVAGRGRHS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttcagatcagggcgagcacagcacgccggccgaccccgccgccaccgcaccc
tctggcgctgacagcgccggcggctccttcgacgacctcgacatacacccgaaggtgcgg
gccgcgatcaccgatgtcgggtacgagaccccgtcgccgatccaggcggccacgatcccg
ccgctcatggcggggcgcgacgtggtcgggctggcgcagaccggcaccggtaagaccgcg
gcgttcgcgatcccgatcctgtcccggatcgacacctccgcccgcactccgcaggctctg
atcctcgcacccacgcgcgaactggcactgcaggtggccgaggccttcgcccggtattcg
tcgcacatgccagatgtcaaggtcctgccgatctacggtggccaggcgtacggcgtgcag
ctcgcaggcctgcgccgcggcgcgcaggtcatcgtcggcacccccggtcgcgtgatcgat
cacctcgaccgcaagacgctcgacatctccggcctggagttcctcgtgctcgacgaggcc
gacgagatgctgacgatgggcttcgccgaggatgtcgaacgcatcctcgccgagaccccg
gacaccaagcaggtcgcactgttctccgcgaccatgcccagcgccatccgccgcctcgcg
cagcgttacctcaactccccgcaggaaatcgccgtcaagtccaagacggcgaccgcgcag
aacatcacgcagcgctatctgcaggtctcacaccagcgcaagctcgacgcgctgacgcga
ttcctcgaggtcgagaccttcgacgggatgatcgtcttcgtccgcaccaagcaggccacc
gaggagctcgcggagaagctgcggtcccggggattctccgcggtggccatcaacggcgac
ctcgcccaggcccagcgcgagcgcacgatcaaccagctcaagaacggcacgatcgacatc
ctcgtggcaacggatgtggccgcccgcggcctcgacgtcgaccgcatctcccacgtcgtc
aactacgacatcccccacgacaccgagtcgtatgtgcaccggatcggccgtaccggtcgc
gccggccgctcgggaaatgcgctgctgttcgtctcgccgcgggagcgtcacctcctgcgt
gcgatcgagcgcgccacccgacagacgctgaccgagatcgggctgcccagcgtcgacgac
gtgaactctcagcgcgtcgcgaagttcgccgactcgatcacccagaacctgtcgtcggac
aacctcgacctgttccgcggcctcatcgagaactatgcccgtgacaacgatgtggcaatg
gccgacatcgccgcggcgctggcgctggagacccgcgacggcggattcctgatgaccccg
gatccgccgcagtcggagcggcgccccgagcaggatcgcgctccgcgacgttcgggtggg
aacttcgcgacctaccgcatcgcggtcggccgcaagcacaaggtgtccccgggcgccatc
gtcggcgcgatcgccaacgagggcggcctctcgcgcggcgacttcggcaacatcagcatc
cgcgacgacttcagcctcgtcgaactgcccgatgacctcgacaacgagacgctgtcgaat
ctccgccacacgaagatcggcaagacccccatcgacatccgcaaggacatgggtgcgccg
cgtacgcgtggcggcggcgggcccaagcgtggcggtggccagggcggcaactggggtaag
cgcccctcgccgcgggtcgccggacgcggacgccactcctga
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