Gordonia jinghuaiqii: H1R19_10515
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Entry
H1R19_10515 CDS
T07538
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gji
Gordonia jinghuaiqii
Pathway
gji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H1R19_10515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gji03019
]
H1R19_10515
Messenger RNA biogenesis [BR:
gji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H1R19_10515
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF459
Motif
Other DBs
NCBI-ProteinID:
QMT03849
UniProt:
A0A7D7R0W1
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Position
2365277..2366932
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AA seq
551 aa
AA seq
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MPKGGLRIVALGGIGEIGRNMTVFEYDGRLLIVDCGVLFPEDQQPGVDLILPDFRYIEDR
MDDVDAVILTHGHEDHIGAIPFLLRLRGDIPVIGSKFTLALVDAKCREHRLRPKLVEVTE
GQKTQHGPFECEYFAVNHSIPDALAVAMRTPAGVVLHTGDIKLDQLPLDGRLTDLAGFSR
LGDEGVDLFLVDSTNAEVPGFVTPERQIGGVLDQVIGKAKQRVIVASFASHVHRIQQIID
VAHTHNRRVTFVGRSMVRNMQIAQDLGYLTMPDGVVVDLDTAATLPDHRVVLISTGSQGE
PLSALSRMARGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGATVITQQSAKV
HVSGHASAGELLYLYNAVRPSNVMPVHGEWRHLRANAALAVATGVPEDRVVLAEDGVVVD
LVDGRAQIVGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAIDSTTGRAVST
PEVSGRGFSDDPEALKEAADIVNQILDSLASEGVNDAHRIAQGIRRAVGRWVSTAYRRRP
MIVPTVIAVGD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
ctgccgaagggtggcctgcggatcgtcgcactcggcggcatcggcgagatcggccgcaac
atgacggtgttcgagtacgacggccgcctgctcatcgtcgactgcggtgtcctgttcccg
gaggaccagcagcccggcgtcgacctcatcctcccggacttccgctacatcgaagaccgc
atggatgacgtcgacgcggtgatcctgacccacggtcacgaggaccacatcggtgcgatc
ccgttcctgctgcgcctgcgcggcgacatcccggtgatcggttccaagttcacgctcgca
ctggtcgacgccaagtgtcgcgaacatcggttgcgccccaagctcgtcgaggtcaccgag
gggcagaagacccagcacggaccgttcgagtgcgagtacttcgcggtcaaccactcgatt
cccgacgcgctggccgtcgcgatgcgcacaccggcgggcgtcgtgctgcacaccggtgac
atcaagctcgatcagctcccgctcgacggtcgcctgaccgacctcgccgggttcagccgt
ctcggcgacgagggtgtcgacctgttcctggtcgactcgaccaacgccgaggtccctggc
ttcgtcacccccgaacgtcagatcggcggggtgctcgaccaggtcatcggcaaggccaag
cagcgggtcatcgtggcgtcgttcgcgagccacgtgcatcgcatccagcagatcatcgat
gtcgcgcacacccacaaccgtcgtgtcaccttcgtcggccggtcgatggtgcgcaacatg
cagatcgcccaggatctcggctacctcacgatgcccgacggggtggtggtcgacctcgac
accgccgcgacgctgcccgaccaccgcgtcgtgctgatctccaccggttcgcagggtgag
ccgctctcggcgctgtcacggatggcccgcggagagcatcgccagatcaacatccgtgcc
gacgatctcgtcgtcctggcgtcgtcgttgatcccgggcaacgagaactcggtgttcgcc
gtcgtcaacgggctggccaagcgcggtgcgacggtcatcacccagcagagtgccaaggtc
cacgtgtcgggtcacgcgtcggcgggggagttgctgtacctgtacaacgcggtgcggcca
tcgaatgtgatgcccgtgcacggcgagtggcggcacctgcgcgccaacgccgcgctcgcg
gtcgcgaccggtgtccccgaggatcgcgtggtgctcgccgaggacggcgtcgtcgtcgac
ctcgtcgacggccgggcccagatcgtcgggcgtgtcccggtcggtcacgtctacgtcgac
ggcctgtccgtcggtgacgtcggggagtcgacgctctccgagcgcctcgtgctcggcgag
ggcgggttcatcgcgatcaccgtggccatcgattcgacgacgggtcgagcggtcagcacc
cccgaggtgtccggacgaggcttttccgacgatccggaagcgctcaaggaggcggccgac
atcgtcaatcagatcctggattcgcttgcctccgagggtgtcaacgacgcccatcgcatc
gcgcagggaatccggcgtgccgtgggccgatgggtgtcgaccgcctaccgtcgccggccg
atgatcgtgccgaccgtcatcgcggtgggggactga
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