Gordonia jinghuaiqii: H1R19_13180
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Entry
H1R19_13180 CDS
T07538
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gji
Gordonia jinghuaiqii
Pathway
gji03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
H1R19_13180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gji03400
]
H1R19_13180
Enzymes [BR:
gji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
H1R19_13180
DNA repair and recombination proteins [BR:
gji03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H1R19_13180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
PDDEXK_1
AAA_25
Arg_decarbox_C
KdpD
DEAD
Motif
Other DBs
NCBI-ProteinID:
QMS99929
UniProt:
A0A7D7R820
LinkDB
All DBs
Position
complement(2944743..2948171)
Genome browser
AA seq
1142 aa
AA seq
DB search
MRRAGTFDITADLPEHTTVLEASAGTGKTYAIVGLAARHIAEGVPISQMLLVTFSRAATA
ELRERMRERVRELLDALGSSSAAVTASSETGDAGHTEDALLRMLASGSADEVTARRRNLA
RALSDFDASTIATTHTFCNRMLEALGFLGERELVYSIVEEVDDLTEEVALDLYLRGFWAS
DAPEFSFAEARDIARDAVRQASVELAPGESELGEGPAADAVAARRVSFASAVRKIVDTRK
RDARVRTYDDLQAILHRIVTDPVVGERACERIRNTFSVALVDEFQDTDPLQWEILRRCFH
GHRRLILVGDPKQSIYGFRGAEVLSYLAAVSSADTLQALDVNWRSDGALVDALGHVYGDA
ALGHPDIVVHPVAAAFAGSRLDGRPPLRLRAFLRGDFTSLNSYGLPGVKEVRNRIAADVA
DDIADTLSQAARIEDRGASRVVDPGDIAILVRQNNTIEPLQRELAARGINSVIGSGVNVF
STSAAHHWLWVLRALEQPSRPDRVRLAALTALFGWSDERVATAEESELAELGAELSTLAR
VFVQGGFAAMAQRLLDAHGVAARVLAADNGERTLTDLIQVSALCNKHVVETSDGLSALVE
WLTERINDTSTRQRYEDQSRRLDRDTRAVQIMTVHASKGLQFPIVYVPYGWDGTWIGDRG
NITYHDESGTRRLDVGGGQAPGRAARRKRYADEVAGEDLRLLYVALTRAQSQVVAWWAPS
MNTTTGPLHRLIFGRDGATRTPGPAGESVWSVASDVAIPGDDITCVGVLRRLTERDGSIS
IEPAGRIDPGLVVPAFDSENAHAALGVARFRRKIDQEWRRTSYSAIVADVAHGPGDPAAS
VVGTGSEPADDVLADEPVDAPEEPIDEPAGPTERSGMPSLMNGLPFGAAFGTLVHEVLEY
VDTSAADIESHVRELCSHALGALAADIDREVLVAALVGVLTTGLGFGDLWSVKPGDRLAE
LDFELPLGPIDSGESGTEMADGATLGRIADLLEEHLGEDDPLRDYAPHLRAVPGRRLRGF
LTGSIDSVLRTPDGRYVIVDYKTNRIRPGDLVVEDFDTASMAREMIAAHYPLQALLYSVA
LHRYLRWRVPDYDPGRHLGPVQYHFVRGMAGPATPPGCGVFEWAVPASLVIALSDALAGE
AR
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgggccggtaccttcgacatcaccgccgacctgcccgagcacacgaccgtgctc
gaggcgagcgcgggcaccgggaagacctacgcgatcgtcgggctcgccgcgcggcacatc
gccgagggcgtgcccatctcgcagatgctgctcgtcaccttcagccgagccgcgacggcc
gaactccgcgaacgcatgcgggaacgcgtccgcgaactgctcgacgcgctcggttcgtcc
tcggccgcggtgaccgcatcctctgagacaggggacgccggacacaccgaggacgcgttg
ctgcggatgctggcgagcggatcggccgacgaggtgaccgcgcgcaggcggaatctcgct
cgcgccctgagcgacttcgacgcctcgacgatcgcgaccacgcacaccttctgcaaccgg
atgctcgaggcactcggtttcctcggcgagcgtgaactcgtctactcgatcgtcgaggag
gtcgacgacctgaccgaagaggtcgccctcgacctctaccttcgcggcttctgggcaagc
gacgcaccggaattcagcttcgctgaggcgcgtgacatcgcccgtgacgcggtgcgccag
gcatcggtggagctcgctccgggagagtccgaactcggcgaggggccggccgcggacgcc
gtcgcggcgcgtcgggtcagcttcgcctcagccgtccggaagatcgtcgacacccgcaaa
cgcgatgcacgcgtgcgtacatacgacgacctgcaggcgatcctgcaccggatcgtcacc
gaccccgtcgtcggcgaacgtgcctgcgagcgcattcgcaacaccttctcggtggccctc
gtcgacgaattccaggacaccgacccgctgcagtgggagatcctgcgacgctgcttccac
gggcatcgtcggctcatcctcgtcggcgaccccaaacagtcgatctacgggttccgcggt
gcggaggtcctcagctacctcgccgcggtctcctcggccgacaccctgcaggcactcgac
gtcaactggcgctccgacggcgcactcgtggacgccctcggccacgtgtacggcgatgcg
gcgctgggacatcccgacatcgtcgtgcatccggtggcggcagccttcgccggcagtcgt
ctcgacggccggcccccgctgcgcctgcgtgccttcctgcgcggtgacttcacctcgctg
aattcctacgggctgcccggggtcaaagaggtccgcaaccgcatcgcggccgacgtcgcc
gacgacatcgccgacaccctgagtcaggccgcgcgcatcgaggaccgcggggcatcacgc
gtggtcgaccccggcgacatcgcaatcctcgtgcggcagaacaacaccatcgaaccgctg
caacgtgaactggccgcacgcgggatcaactcggtcatcggctccggtgtcaacgtgttc
tcgacgagcgcggcgcaccactggctgtgggtgttgcgcgccctcgaacaaccctcgcgt
cccgaccgggtccgcctggccgcactgacggcgttgttcggatggtccgacgagcgggtg
gcgaccgccgaggagtccgagctcgccgagctcggtgccgaattgtccacgctggccagg
gtgttcgtgcaaggcgggttcgccgcgatggcacagcggcttctcgacgcgcacggggtg
gcggcacgggtgttggccgccgacaacggcgaacgtacgctcaccgatctgatccaggtg
tcggcgctgtgcaacaagcacgtcgtggagacctcggacgggctcagcgccctggtcgaa
tggctgaccgagcggatcaacgacacgtccacgcggcagcggtacgaggatcagagccga
cgcctcgaccgtgacacgcgggccgtccagatcatgacggtgcacgccagcaaaggactg
cagttcccgatcgtctacgtcccctacggctgggacggcacgtggatcggtgaccgcggc
aacatcacctaccacgacgagtcgggaacgcggcgcctcgacgtcggcgggggacaggca
cccggacgtgcggcgcgacgcaagcggtacgccgacgaggtcgccggtgaggacctccga
ctgctctacgtcgcgctcacgcgtgcccaatcgcaggtcgtcgcatggtgggcgccgtcg
atgaacaccaccaccggaccactgcaccggctgatcttcggtcgcgacggcgcgacccgc
acacccggccccgccggcgaatcggtgtggtcggtcgcctccgatgtcgcgatccccggc
gacgacatcacctgcgtgggtgtcctgcggaggctgaccgaacgcgacggctcgatctcg
atcgagccggcgggacgtatcgaccccggtctggtggtacccgcattcgattccgagaac
gcccatgcggcgctcggggtggcccgcttccgccggaagatcgatcaggagtggcgtcgg
acgtcgtactcggcgatcgtcgccgacgtcgcgcacggccccggcgacccggcggcgtcc
gtcgtcgggaccggtagtgaacccgcggacgacgtcctggccgatgaaccggtggacgcg
cccgaggagccgatcgatgagccggccggcccgaccgaacgttccggcatgccgtcgctg
atgaacggactgcctttcggtgcggccttcggcaccctcgtgcacgaggttctcgagtat
gtcgacacctccgccgccgacatcgaatcccatgtgcgcgaactgtgttcacacgcgctc
ggtgcgctggccgccgacatcgaccgggaggtgctggtggccgcgctggtcggtgtgctc
accaccggactgggtttcggtgacctgtggagtgtcaagccgggcgaccgtctggccgag
ctcgacttcgaactcccgctcggacccatcgattcgggcgagagcggaaccgagatggcc
gacggcgcgaccctcggacgaatcgccgaccttctggaagagcatctgggggaggatgat
ccgctccgcgactacgcaccccacctgcgggcggtgcccggtcgtcggctccgcggattc
ctcaccggcagcatcgattcggtcctgcgaacgcccgacgggcgctacgtgatcgtcgac
tacaagaccaaccgcatccgtcccggcgatctggtcgtcgaggacttcgacaccgcgtcg
atggcccgagagatgatcgccgcacactatccgctgcaggcgttgctgtattcggttgca
ctgcaccggtatctgcgatggcgggtcccggactacgatcccggccgccacctgggaccg
gtgcaataccacttcgttcgcgggatggccgggccggcgaccccgccagggtgcggtgtc
ttcgaatgggcggtgccggcgtcgctggtgatcgccctgtccgacgcgcttgccggggag
gcacgatga
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