Gordonia jinghuaiqii: H1R19_21685
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Entry
H1R19_21685 CDS
T07538
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gji
Gordonia jinghuaiqii
Pathway
gji03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H1R19_21685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gji03400
]
H1R19_21685
Enzymes [BR:
gji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H1R19_21685
DNA repair and recombination proteins [BR:
gji03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H1R19_21685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QMT01399
UniProt:
A0A7D7LW55
LinkDB
All DBs
Position
4872005..4874377
Genome browser
AA seq
790 aa
AA seq
DB search
MAGGEILEVNGRRISITNLSKVLYPAAGTRKFEVIDYYSRIADVMLPHLHNRLITRKRWP
NGVESTPFFEKNLPDSAPDWIRRHGIQHSERVIEYAMADDKATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVALEIRNWLGGATTYPVTSGGKGIHLYA
RLPKPVPSDAARKVAQEVANEFARQNSDFITAKMSKSLRDDKVFIDWSQNTAAKTTLAPY
SLRGREHPWVAAPRTWEEMSDPDLSQLLYTEVLERVAEFGDLLADLDAPYDDEPGPDAEP
EPGEVINLREYRRKRDRSKTPEPFGDEVHRQRVATEDEPFADSEADVPTAGRAPIFVIQE
HHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAGEYG
GGHVSIWDKGTFELEKWRDKEVIVRLHGERVQGRYALIRTGDKNWLAHLMSDEPRPILPD
SLTDPRPMLATDEAIDGLNGRDWAFEGKWDGYRLLVRSVGGEFRLTSRSGIDMTRDFPEL
AGLADDLGLMDVVLDGEVVALDSSGRTNFTLLTSRRHTDEPYNLRLYLFDILFLNGSSLL
RKPWSVRRELLEELASAFRNSPFVEVPPLLPAPGHAAVEYSREHNLEGVVAKRRNSVYQQ
GRRSTTWLKHKNWSDIEVVVGGYRPGRGNRADTIGSLLIGLPEDTGLRYVGRVGTGFTDA
QLRSLAEELEPLKISRSPFLDKLDRPVAASAVWVLPKIVGEVRFMDWTSAGHLRHPSWRG
IRRDKLPGDL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggcgagatcctggaggtcaacggtcgccggatctcgatcaccaatctctcc
aaggtgctctatccggcggccgggacgcggaaattcgaggtcatcgactactactcgcgt
atcgccgatgtcatgctcccccacctgcacaatcggctgatcacccgcaagcggtggccc
aacggcgtcgagtcgaccccgttcttcgagaagaacctccccgacagcgccccggactgg
atccggcgtcacggcatccagcacagcgaacgggtcatcgaatacgcgatggccgacgac
aaggccaccctggtgtggctcgcccagatggccgtgctggagatccacaccccgcaatgg
cggctgccgatgggccccgacggtgcacccatggccaaccgcatcgtcttcgacctggac
cccggcccgcgggtgcccctgcaccggaccgccgaggtcgccctggagatccgcaactgg
ctcggcggcgcaaccacctaccccgtcaccagcggcggcaagggcatccatctgtacgcc
cgtctgccgaagcccgtgccgtcggacgcggcacggaaggtcgcacaggaggtcgccaac
gaattcgcccgccagaacagcgatttcatcaccgccaagatgtccaagtcgctgcgcgac
gacaaggtgttcatcgactggagccagaacaccgcggccaagacgacactcgccccctat
tcgctccgcggtcgcgaacacccgtgggtggccgcaccgcgcacctgggaggagatgtcc
gaccccgacctgtctcagttgctctacaccgaggtactcgagcgcgtcgccgagttcggc
gacctcctcgccgacctcgacgccccctacgacgacgaacccggacccgacgccgagccg
gagcccggcgaggtcatcaacctgcgcgaataccgccgcaaacgcgaccggtcgaagact
ccggaacccttcggcgacgaggtgcaccggcaacgcgtcgcgaccgaggacgagccgttc
gccgattccgaggccgacgtcccgaccgccgggcgcgcaccgatcttcgtcatccaggag
catcatgcgcggcgcctgcactacgacttccgcctcgaacacgacggtgtcctggtctcc
tgggcggtcccgaagaatctcccgaccgatcccgatcagaaccggctcgccgtgcagacc
gaggaccaccccatggactatgccgatttcgaaggcgacatccccgcgggcgagtacggc
ggcgggcacgtatccatctgggacaagggcactttcgagctggagaagtggcgcgacaaa
gaggtcatcgtccggctccacggcgagcgggtccaagggcggtatgcactgatccgcacc
ggggacaagaactggctcgcgcacctgatgagcgacgaaccgcgcccgatcctccccgac
agcctcaccgatccgcgcccgatgctcgccaccgacgaggcgatcgacgggctcaacggg
cgcgactgggcgttcgagggcaagtgggacgggtaccggctgctcgtgcgctcggtgggc
ggcgagttccgtctcacctcgcgttcgggtatcgacatgacccgggatttccccgaattg
gccggcctggccgacgatctcgggctgatggacgtcgtcctcgacggcgaggtggtggca
ctggactcctccgggcgcaccaacttcaccctcctcacctcacggcggcacaccgacgag
ccgtacaacctgcggctctacctcttcgacatcctgttcctcaacggctcgtcgttgctg
cgcaagccgtggtcggtacgacgcgaactcctcgaggaactcgcatccgcgttccggaac
tcgccgttcgtcgaggtcccgccactgcttcccgcacccggccacgccgcggtcgagtac
agccgcgaacacaacctcgaaggtgttgtcgccaaacgccgtaactcggtctaccaacag
ggccggcgctccaccacctggctcaaacacaagaactggagcgacatcgaggtcgtcgtg
ggcggttaccgtccgggccgcggcaaccgcgccgacacgatcgggtcgttgctcatcgga
ctgcccgaggacaccggactgcggtatgtcggtcgcgtggggacgggattcaccgacgcg
caattacgttcgctcgccgaagaactcgagccgctgaagatctcgcgatcgccgttcctg
gacaaactcgaccgtccggtcgcggcgagtgcggtgtgggtgctgcccaagatcgtcggc
gaggtgcgtttcatggactggacatcggccggacatctgcgtcacccgagctggcggggt
atccggcgggacaaacttcccggcgatctctga
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