Gilvimarinus japonicus: R50076_12140
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Entry
R50076_12140 CDS
T10758
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gjp Gilvimarinus japonicus
Pathway
gjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50076_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gjp03019
]
R50076_12140
03009 Ribosome biogenesis [BR:
gjp03009
]
R50076_12140
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50076_12140
Messenger RNA biogenesis [BR:
gjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50076_12140
Ribosome biogenesis [BR:
gjp03009
]
Prokaryotic type
rRNA helicases
R50076_12140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Transketolase_C
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFM20165
LinkDB
All DBs
Position
complement(1479020..1480741)
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AA seq
573 aa
AA seq
DB search
MTTENLTFSDLALSPAVLSAVTKVGYEVPSPIQAAAIPALLEGKDIVGLAQTGTGKTAAF
ALPMLSQVDVTKSHTQILVLAPTRELAIQVAEAFQRYASEMPGFHVLPIYGGQDMRGQLR
QLKRGAQVVVGTPGRVMDHLRRGSLDLSKLTNLVLDEADEMLRMGFIDDVSWILEHTPAT
RQTALFSATMPKEIRRVATTYLRNPEEIRIANESKTGANIEQVYWMVSGTNKLDALTRIL
EVEPFDAIIMFVRTKTATVELAEKLEARGYSAAAINGDMNQQLRERTIERLKNKKLDILI
ATDVAARGIDVERVSHVINYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYAI
EKATSQRIEAMKLPSGDTITAARVDQFFQSITEVLESEQDMSFFDDLLGNYCREKEVEPE
QLAMAMAYLLQKDRPLQVKLADIKPDPIREKRERSGSDRGERGERRSRAPEQGMKRFRIE
VGRTHGARPGDIVGAIANEAGLQSRQIGQIKLFDSFSTLDLPEDMAATMAQKIASIHVRG
QVLSLSEDRGPARKGGGGGSFKPKGKKKKFASK
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagaaaaccttactttttccgatttggccctttcaccggccgtattaagtgcc
gtaaccaaagtcggctacgaagtaccctcaccgattcaggcggctgctattccggccctg
ctggaaggtaaagacatcgtcggcctggcacaaaccggtaccggtaaaaccgccgccttt
gctttgccgatgctgtcacaagtcgatgtaactaaatcacacacacaaattctggtattg
gccccgacccgcgaacttgctattcaggtagccgaagcctttcaacgctacgccagcgag
atgcccggctttcatgtactgcctatttacggcggtcaagatatgcgcggccagttgcgt
cagcttaagcgtggcgctcaggttgttgtgggcacccccggccgagtgatggatcacttg
cgccgcggcagcttagatctgtctaagctcaccaacctagtattggacgaagccgacgaa
atgctgcgcatgggctttatcgacgacgtatcctggattttggagcacaccccggccaca
cgccaaaccgcgctgttctcggccaccatgcccaaagaaattcgccgtgtcgccactact
tacttgcgcaacccggaagaaatccgcatcgccaacgagagtaaaaccggcgccaacatc
gagcaggtgtactggatggtaagcggcaccaacaagctggacgcactaacccgcatcctc
gaagttgagccgtttgatgccattattatgtttgtgcgcaccaaaaccgccaccgttgaa
ctggccgaaaaactagaagcgcgcggttactcggcggcggccattaacggtgacatgaac
cagcagttacgcgagcgcaccatcgagcgcttaaagaacaagaaactggacattttgatt
gccaccgacgtggccgcacgcggtatcgatgtggagcgcgtaagccacgtaattaactac
gatattccgtacgatagtgaagcttacgttcaccgtattggccgtactggccgtgccggg
cgctcgggcaaggcgattttgtttgtcgcgccgcgcgaaaagcgtttgctttacgccatc
gaaaaagccacttcacaacgcatcgaggcaatgaaactgcctagcggcgacaccatcacc
gccgctcgcgttgatcagttttttcagagcattaccgaggtgttggagtccgagcaagac
atgagcttttttgacgacttgctgggtaactactgccgcgaaaaagaagtggagcccgag
cagttagcgatggccatggcttatttgctgcaaaaagatcgtccgttgcaggtaaagctg
gccgacattaagcccgaccctatccgggaaaaacgcgagcgcagtggtagtgatcgtggc
gagcgcggtgagcgccgctcacgggcaccggagcaaggcatgaagcgcttccgcatcgaa
gtgggtcgcactcatggtgctcgcccaggggatatcgtcggcgccatcgccaatgaagct
ggcttacagagccgtcaaattggtcagattaaactgttcgacagcttctcgactctggat
ttgccggaagatatggcagccaccatggcgcaaaagattgcctctatccatgtgcgcggc
caggtactgtcgctcagtgaagatcgcggtccggctcgcaaaggcggtggcggcggcagt
tttaagcccaaaggtaaaaagaaaaagtttgccagcaaataa
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