Gilvimarinus japonicus: R50076_14110
Help
Entry
R50076_14110 CDS
T10758
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gjp Gilvimarinus japonicus
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gjp03009
]
R50076_14110 (rlmD)
Enzymes [BR:
gjp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
R50076_14110 (rlmD)
Ribosome biogenesis [BR:
gjp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
R50076_14110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltrans_SAM
MTS
PCMT
UPF0020
Methyltransf_15
PrmA
Methyltransf_12
CMAS
Methyltransf_23
RrnaAD
DOT1
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
BFM20362
LinkDB
All DBs
Position
1710373..1711749
Genome browser
AA seq
458 aa
AA seq
DB search
MSRRAPHRGRQRPKTKRQAPAGPPLELDIIRLSHDGRGIGTHQGKTVFVSGALPGERVIA
KLQQEFGRYSEAQVLELLSRSEQRQAPVCVHFGQCGGCQLQHMDAAEQLAAKQQGVLDQL
RRFANVVPEQMAVPLTAQVLGYRARARLGVQFNKAGKVALGFRRAGDKQLVALSQCPVLQ
PSLQSVLAPLAAWLERFNVLAVTHVELVATELCTLVIRLIRPLAHDASEALMTLADECGW
QVFLQPGSDKKALTTVGGESVDPRLHYTLTAASSAKKTLTIGFHPTDFTQVNPAINQKMV
TQVLEWLGLSVGERLWDLFCGVGNFSLPAAQCAAQVIGVEAVEAMVARARENAAANHIAN
IEFLAADLSQSSIDRLIQKAGRPDAIVLDPPRDGARDICEQLGKLKRARIVYVSCNPATF
VRDARILVDQGYRLQRFGVMEMFPQTSHLETMALLIKG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccgagcgccccatcgcggacgtcagcgacccaaaaccaaacggcaagcccct
gcggggccgccgcttgagctggatatcataaggctcagtcacgatggtcgcggtattggc
acgcaccaaggcaagacggtgtttgttagtggagccttgccgggcgagcgtgtaatcgcc
aaattacagcaagagtttggccgttatagcgaagcgcaggtgcttgagctgctcagccgt
agcgaacagcgccaagcgccggtttgcgtgcattttggtcagtgtggtggttgtcagttg
cagcacatggacgccgctgagcagctcgccgccaagcagcaaggggtgttggatcaattg
cgccgctttgccaatgtggtgcccgagcaaatggccgtaccattgacggcacaagtgttg
ggttatcgcgctcgcgctcgtcttggggtgcaatttaataaggccggtaaggtggcgtta
gggtttcggcgcgcgggcgataaacagcttgttgcactctcgcagtgtcccgtgttgcaa
ccgtcattgcagtcggtcttggctccgctggccgcgtggctggagcgctttaacgtgctt
gcggttactcatgttgagctggtggcgactgagctttgtactttggtgatacgtttaatt
cggccattggcacatgatgcgagcgaggcgctgatgacgcttgcagatgagtgtggctgg
caggtgtttttacagccgggcagtgataaaaaagcgctcaccactgttggtggtgaatcg
gtggacccgcgcttgcattacacactaacggctgcctccagcgcaaaaaagacgttaacc
ataggctttcaccccactgattttactcaggtaaacccggcgattaatcaaaaaatggtg
acccaggtactcgagtggctgggtttgtcggtcggtgagcgtttgtgggatttattttgc
ggcgtgggtaacttttcgttgccggcggcgcagtgtgccgctcaggtaatcggggtcgag
gcggtcgaggcgatggtggcgcgcgcgcgcgaaaacgctgccgccaatcatattgccaat
atcgagtttctcgccgccgatttaagccaatcatccattgaccggctgatacaaaaggcg
ggccggcccgatgcgatcgtgctggacccgccgcgcgatggggcacgagatatatgcgag
cagctgggaaagctgaagcgcgctcgtatcgtttatgtgtcgtgtaatcctgccaccttt
gtgcgggatgcaagaattttggtcgatcaggggtatcgcttgcagcgctttggggtgatg
gagatgtttccgcagacctcgcacctggaaactatggctctgttgattaaaggctaa
DBGET
integrated database retrieval system
