Gilvimarinus japonicus: R50076_14890
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Entry
R50076_14890 CDS
T10758
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gjp Gilvimarinus japonicus
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gjp03032
]
R50076_14890 (topA)
03400 DNA repair and recombination proteins [BR:
gjp03400
]
R50076_14890 (topA)
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R50076_14890 (topA)
DNA replication proteins [BR:
gjp03032
]
Prokaryotic type
DNA Topoisomerases
R50076_14890 (topA)
DNA repair and recombination proteins [BR:
gjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R50076_14890 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BFM20440
LinkDB
All DBs
Position
1790765..1793389
Genome browser
AA seq
874 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGRDFIVKSSVGHIRDLPTSGSGKKVDPKERARQAAITRK
LSPEAKAKHKAEKSQQQLISRMGIDPTHDWAAHYEILPGKEKVVAELKQLAADADTIYLA
TDLDREGEAIAWHLREAIGGDDARYRRVVFNEITKTAIQNAFENPGPIDIDRVNAQQARR
FLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWNLFADLVAK
AGDQIRFEVKKQGGKTFRPDNEADTMAAVAKLKDASFNVAQREDKPTQSKPSAPFITSTL
QQAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVESCREYIQDEYGKRYLP
EAPRSYSSKEGAQEAHEAIRPSSVTVLTAHLKGMERDAERLYTLIWSQFVACQMSNAEYT
STSIVVEAGDFELRTRGRVIRFDGFTRVMPQIAKKDEDVVLPEVKVGDELPLEKLDPSQH
FTKPPARFSEASLVKELEKQGIGRPSTYASIISTIQDRGYVRLENRRFYAEKMGDIVTER
LSESFSDLMSYSFTANMEQSLDVVAEGGKNWRQLLDEFYADFIGQLQSAQSEESGGMRHN
DPTNTDIECEKCGRDMQIRTGSTGVFLGCSGYGLPPKERCKHTMNLVSGDEAVDVDGDED
AESRQLRSKRRCQICNTAMDNYLLDEKRKLHICGNNPDCPGYEVELGTFKLKGYEGPTLE
CDKCGSEMQLKTGRFGKYFGCTNDECKNTRKLLKSGEAAPPKMDPVPMPELACQKVDDTY
ILRDGASGLFLAASGFPKNRETRAPLVAEILPHKKEIDPKYTFLFSAPVADPDGVPTVIR
FSRKTKEQYVQSEVDGKASGWKAFYQGGKWVPNK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctttggttattgtagagtcaccggcaaaagcgaagaccattaacaaatat
ctggggcgtgactttattgttaaatccagtgtcggtcatattcgcgatttgcccacgagt
ggcagcggcaaaaaagtcgacccaaaagagcgggcccgccaagcggctatcacgcgtaag
ctatcccccgaagccaaagccaagcataaggccgaaaaaagccagcaacaattgattagc
cggatggggattgaccccacccacgattgggctgcgcattacgagatcttacccggtaaa
gaaaaagtggttgccgagctaaaacagttggccgccgatgccgacactatctatctcgcg
acggatttggatcgcgagggagaggctattgcctggcatttgcgtgaggctattggtggc
gacgatgctcgttatcgccgagtagtgtttaatgagattaccaaaacagcgattcaaaac
gcgtttgaaaatcccggacccattgatattgatcgtgttaatgcccagcaagcacgccgg
tttctcgaccgggtggtgggctacatggtctcgccgttgctgtgggccaaaattgcgcgt
gggctatcggccgggcgtgtgcaatctgtggcggttaagctggtggttgagcgcgagcgt
gaaattcgcgcctttgtgcccgaagagtactggaacctctttgccgatttagtggcaaaa
gcgggcgatcaaattcgttttgaggttaaaaagcagggcggtaaaacctttaggcccgac
aacgaagccgatactatggcggcggttgccaagcttaaagacgccagttttaacgtcgcc
cagcgcgaagataaaccaacccaatctaaaccctcggcaccttttattacctcaacctta
cagcaggcggcgagcacccgcttagggtttggggttaaaaagaccatgatgttggctcaa
cgcttgtatgaggcgggctacatcacctatatgcgtactgactcaaccaacttgagcaaa
gaagcggtggagtcttgccgcgagtatattcaagatgaatacggcaagcgctacctgcct
gaagcacccagaagttattcgagcaaagagggggcgcaagaggcgcacgaagcgatacgc
ccctccagtgtcacggtgttgaccgctcatttaaaaggaatggaacgcgatgccgagcgc
ttgtacacactaatttggtcgcaatttgtcgcctgccagatgagcaatgccgaatacacc
agtacctcgattgtggttgaggccggcgattttgagctgcgcacccgcggtcgggttatt
cgttttgatggcttcacccgagtgatgccgcaaatcgcaaaaaaagacgaagatgtcgtg
ttgccagaggtcaaagttggcgatgagctaccgctggaaaaactcgacccgtctcaacac
tttaccaagccccccgcgcgcttttctgaggcgagtttggtgaaggagcttgaaaagcaa
ggtattggtcgcccatcgacgtacgcatctattatttcaaccattcaagatcgcggttat
gtgcgcttagagaaccgtcgcttttacgcagaaaaaatgggcgatattgttaccgagcgt
ttaagtgaaagtttttcagacttaatgagttatagctttacggccaatatggagcaatcg
ctcgacgtggtggccgagggtggcaaaaactggcgccagcttttggatgagttttacgca
gattttatcggtcagttacagagcgcgcaaagtgaagagtcgggcggtatgcgccacaat
gatccgaccaacaccgacattgagtgtgaaaagtgtggtcgcgacatgcaaattcgcacg
ggctctacaggtgtgtttttaggctgttctggctatgggttgccccccaaagagcgctgt
aagcacaccatgaatcttgtctcgggtgatgaggctgtggatgtcgacggtgatgaagac
gccgagtcgcgccagctgcgctctaagcgccgctgccaaatttgtaacaccgccatggat
aactatttgcttgatgaaaaacgcaaattgcatatctgtggcaacaatccagattgccct
ggctacgaggtcgaactaggcacctttaaattaaaaggttacgaaggcccgaccttagag
tgtgataaatgcggcagtgagatgcagctaaaaacggggcgctttggcaaatattttggc
tgcacgaatgacgagtgtaaaaatacccgcaaactgctgaaaagcggtgaggcggcacca
cccaaaatggacccggtgccaatgcccgaacttgcttgtcaaaaagtggacgatacctat
attttgcgtgatggtgcatccggtctgtttttggcggctagtggtttccccaaaaaccgc
gagacgcgagcaccgttggtggccgaaattttgccccataaaaaagagattgaccctaaa
tatacgttcttattctcagcgcccgtggcagatccagatggtgtgccgacggtgattcgt
ttctcgcgtaaaaccaaagagcagtatgtgcagtcagaggttgacggcaaggccagtggc
tggaaagccttttaccagggcggcaaatgggtgccgaacaaataa
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