Gilvimarinus japonicus: R50076_14980
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Entry
R50076_14980 CDS
T10758
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gjp Gilvimarinus japonicus
Pathway
gjp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50076_14980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gjp03400
]
R50076_14980 (mfd)
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50076_14980 (mfd)
DNA repair and recombination proteins [BR:
gjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R50076_14980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
UB2H
ERCC3_RAD25_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BFM20449
LinkDB
All DBs
Position
complement(1798893..1802357)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTQLDPRHPDITDRPGERRHWGQLHGGAQALALASAARQHAGLSLAVTSDTASAQRLEIE
LRFYAGPELNILHLADWETLPYDSISPHQDIISERLRTLYHLPSTHHGILVVPVTSLLQR
LMPKDYLVQNSLLLKVGETLDLATLRDNLIQAGYRVVDTVYEHGEFAVRGALIDIFPMGS
DLPLRIDLFDDEIDTLRTFDPDTQLTQDKIDKLELLPAREYPLDKAGISRFKNRWHQRFE
VDPSACSIYRDVSDGIAPPGIEYYLPLFFDHNSTLFDFLPSNTVAYTLGDTQGAASHFLQ
ELWARYESRGVDPTRPLLAPHEIYLREEELFAGLKGMSRTQIGAEQLPDKAGQLNFDSSI
PPSLPIHAQAENPLTSIEAFLMEFNGRVLFCAESAGRRETLLELLGRIRVKPATIDQWQT
FADGDERIGITIGAIDQGLVIADGAIALVAESQLFGERIQQTRRRRQGQDNAENVVKNLT
ELKVGAPVVHIDHGVGRYRGLETISVEGDTSEFLMLEYADEAKLYVPVTSLHLISRYSGA
DEETAPLHRLGSEAWQKAKRKAAEQVRDTAAELLDIYARRAARKGLAFADPKTDYLTFAA
GFPFEETPDQQTAIEAVVKDMLSPQPMDRLVCGDVGFGKTEVAMRAAFVAAHAGKQVAIL
APTTLLAQQHYESLKDRFASWPFEIEVMSRFRTSKEVEAVKERLADGKVDIVVGTHKLIQ
PDIKYKDIGLLIIDEEHRFGVRQKEQLKKLRAEVDILTLTATPIPRTLNMSMAGIRDLSI
IATPPARRLSVKTFVRQHDDATIKEAVLREILRGGQVYYLHNEVKSIERTARALQELVPE
ARVGIGHGQMRERELEKVMSDFYHKRFNVMVCSTIIETGIDIPSANTIIIHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLTPERRAMTADSLKRLEAISAAEDLGAGFTLATHDMEIRGA
GELLGDEQSGQIHTIGFSLYMDMLDRAVKAMRAGKEPNINQPLEDNTDVNLRVPALIPDD
YLPDVHSRLVMYKRLAGATNSEALRELQVEMIDRFGLLPEPVKNLVRVTDIKLIAAELGI
KKLEASATGGKLEFAADTTVDPYNIVQLVQNQPNVFRLEGANLLKFTLPMDDPEMRLEHV
KDLLQMLKPANTEG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacttgatcctcgccaccccgacatcaccgaccgccccggcgagcgccgccac
tgggggcaattacacggtggggcacaagcgctggcgctggccagcgccgcccggcaacat
gcgggattaagtttagccgttaccagcgacaccgccagcgcccagcggcttgagatcgaa
ctgcgtttttatgccggccccgagctcaatattctacacttggccgactgggaaaccctc
ccctacgactcgatctcgccccaccaagatattatctctgagcgcctgcgcaccttgtac
cacctgccgagcacccaccacggcatactggtcgtaccggttaccagcttgctgcaacgg
ctgatgcccaaagactaccttgtacaaaacagcttactcttaaaagtaggcgagacactg
gatcttgccaccttgcgcgacaacctaattcaagccggctatcgcgtagtcgatacagtt
tacgaacacggcgagtttgcggtgcgcggtgcgctgattgatatcttcccgatgggcagc
gatttaccgctgcggatcgacctgttcgacgacgagatcgacaccctgcgcacctttgat
ccggacacccagctcactcaggataaaatcgacaagctagagctactacccgcgcgggaa
tacccgctcgacaaagccggcatcagccgctttaaaaaccgctggcaccaacgctttgag
gtggaccccagcgcctgctcgatctaccgcgatgtcagtgacggcattgcgccgccgggc
atcgagtattatttaccgctgttttttgaccacaacagtacgctgtttgattttttaccc
agcaataccgtcgcctacacattaggggacacccaaggcgctgccagccactttttgcaa
gaactatgggcgcgctacgagtctcgcggggtcgaccccactcgcccactgttggccccg
cacgagatttacctacgcgaagaagagctatttgccggcctcaaaggtatgagccgcacc
cagattggcgccgagcaattgccagacaaggccggccagctgaatttcgactccagcatt
ccgccatcgctgcccatccacgcgcaagccgagaacccgctcaccagcatcgaagctttt
ttgatggagtttaacggccgcgtactgttttgtgccgagtccgccgggcgccgtgaaacc
ctcttagagctgctgggccgcattcgcgttaaacctgccaccatcgaccaatggcagacg
tttgccgatggtgacgagcgtatcggcattaccattggcgccatcgaccaaggcctagta
atcgccgacggcgccattgccttagtggccgagtcgcaattgtttggtgaacgtatccag
caaacccggcgccgccgccaagggcaagacaacgcggaaaacgtcgttaaaaacctcacc
gagcttaaagtcggcgcacccgtcgttcacatcgatcacggcgtggggcgctatcgcggc
ttggagaccatcagcgtcgaaggggacaccagcgagttcctgatgctggaatacgccgac
gaagccaagctttatgtgccagttaccagcttgcaccttattagccgctacagcggcgcc
gatgaagaaaccgcacctctgcaccgactcggctcggaggcctggcaaaaagccaagcgc
aaggcggccgagcaagtgcgcgacaccgccgccgagctcttagacatttacgcccggcgc
gccgcgcgcaagggtttggcttttgccgaccctaaaaccgactacctgacgtttgccgca
ggcttcccctttgaagaaacccccgatcaacagaccgccattgaggccgtcgtcaaagac
atgttgtcaccgcaaccgatggaccgtttggtgtgcggcgacgtcggctttggcaaaacc
gaagttgccatgcgcgcggcatttgtagccgcccacgccggcaagcaggtggcgatttta
gcgcccaccaccctgctcgcccaacagcactacgaatcgctaaaagatcgttttgccagc
tggccgttcgagatcgaagtcatgagccggtttcgcaccagcaaagaagtcgaggccgtt
aaagagcgcttagccgacggcaaagtagacatcgtggtaggcacccacaagctgatccag
ccagacatcaagtacaaagacattggcttgctgattatcgacgaagagcaccgctttggc
gtacgacaaaaagagcagctaaaaaagctgcgcgccgaggtggatattttgaccctgacc
gccacaccgattccgcgcaccttaaatatgtccatggcgggcatacgcgacttatccatt
atcgctacaccgccagcgcggcgactatcggtaaaaacttttgtccgccaacacgacgat
gccaccatcaaagaggcggtactgcgcgaaatcttacgcggtggtcaggtgtactacctg
cacaacgaggtcaaaagcatcgagcgcaccgcccgcgccctgcaagagcttgtgcccgag
gcccgcgtcggcattggccacggccaaatgcgcgagcgtgaactggaaaaggtcatgtcc
gacttttaccacaagcgctttaatgtgatggtctgctcgacgattatcgaaaccgggatc
gacatccccagcgccaacaccattattattcaccgcgccgataagtttggcttggcgcaa
ctgcaccagttgcgcggccgtgtgggccgctcgcaccatcaggcttacgcctacttgctc
acccccgagcgacgcgccatgaccgccgattcactcaaacgcctagaggctatctcagcc
gccgaagacctgggcgcgggcttcaccctagccacccacgatatggagattcgcggtgcc
ggcgaacttttaggcgatgagcagagcggccaaattcacaccatcggcttctcgctgtat
atggatatgctggatcgggctgtaaaagccatgcgcgctggcaaagagcccaacatcaat
cagccactggaagacaacaccgacgtcaacttacgggtgccagcgctgatccccgacgat
tacctacccgacgttcactcgcgtctggtcatgtacaagcgcctcgccggagcgactaac
agcgaggcgttgcgcgagctgcaagtagagatgatcgatcgctttggcctgctgcccgaa
ccggtaaaaaacctggtgcgggtaaccgacatcaaactgatagcggccgagctaggcatc
aaaaaacttgaggcgtcggccacgggcggcaaactggagtttgctgccgacaccacagtc
gacccgtacaacattgttcagctggtacaaaatcagcccaacgtatttcgtttagagggc
gccaaccttttgaagtttaccctgcccatggacgaccctgaaatgcgccttgagcacgtc
aaggatttactgcaaatgctaaagccggctaacaccgagggctaa
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