Gilvimarinus japonicus: R50076_22500
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Entry
R50076_22500 CDS
T10758
Name
(GenBank) hypothetical protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gjp Gilvimarinus japonicus
Pathway
gjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50076_22500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gjp03019
]
R50076_22500
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50076_22500
Messenger RNA biogenesis [BR:
gjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50076_22500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
RpoY
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BFM21201
LinkDB
All DBs
Position
complement(2642783..2644405)
Genome browser
AA seq
540 aa
AA seq
DB search
MIAKLFKKIVGGDSSPKQTAKPNQDADAPKTARGPKDKPGDKTNAKPKSGDSKGGANNRN
KRDGKASSKDSADTRAPKNTSSSRERSGKSAKRPPKQPWDISQFPVPEVPGKVRFHDFHL
DNDLMHAIADLGFEYCSPIQGQSLPFALKGRDVVGKAQTGTGKTAAFLTAIIEDLLKHPL
EEQRYAGEARALVIAPTRELVMQIAEDAELLCKYTDLQVHTLVGGMDYGKQQRRLNDSLV
DILVATPGRLLDFCRNKDVHLDQLEIMVIDEADRMLDMGFIPQVRQIVRQTPRREERQTL
FFSATFTDEVHRLVDQWTNNPETIVIEPESVATDTVTQYVYLASTDEKYTLLYNLIQDES
VESMIVFANRRDECRRLEDKLKRHGIKVGLLSGEIAQNKRVSTLNAFKDGAIKVLVATDV
AGRGIHIDGISHVVNFTLPEEPEDYVHRIGRTGRAGNSGTSISFACEDDAFLLEPIQQLL
GKPLPCEQPPEALLAEMPPMAPAPRRSSSDRSSRSGGGSHKRGPSRGNSRGPRGGHRSSR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgcaaagctgttcaaaaagattgtcggtggcgacagctcgccgaagcaaacggca
aaacccaatcaagacgccgacgcgcccaagaccgcgcgcggccctaaagataagccgggc
gataaaaccaacgccaagcctaaatcgggcgatagcaaaggtggggcaaataaccgcaat
aagcgtgatggtaaggcctccagcaaagatagcgccgatacgcgcgcgcctaagaatact
agctccagccgggagcgctcgggcaaaagcgctaagcgcccgcccaagcagccttgggat
atctctcagtttccggtcccggaagtgccaggcaaagtgcgtttccatgacttccactta
gataacgatctgatgcatgccattgctgacttaggctttgagtactgttcgccgattcag
gggcagtcgttgcccttcgccctaaaagggcgcgatgtggtgggtaaggcccagacaggg
acagggaaaaccgccgcctttttaacggcgattattgaagatttattgaagcacccctta
gaggagcagcgctacgccggtgaggcgcgagcgctggtgattgcaccgacccgtgagctg
gtgatgcaaatcgcggaagacgccgagctgctgtgtaaatacactgacctgcaagtgcat
accttggtgggtggtatggattacggcaaacagcaacggcgtctcaacgatagcttggtg
gatattctggtggcgacaccggggcgtttgttggacttttgtcgcaataaagatgtgcac
ttggatcagctcgagatcatggtgatcgatgaagccgaccgcatgttggatatgggtttt
attccgcaggtgcggcaaattgtgcggcaaacaccgcgccgcgaagagcgtcaaaccttg
ttcttctcggccacctttaccgatgaagtgcaccgcttggtggatcagtggaccaataat
cccgagaccattgtgatcgagccggaaagcgtggccaccgatacagtaacccaatatgtg
tatctggccagcaccgatgaaaaatacaccttgctctacaatttgatccaagatgagtcg
gtcgagagcatgattgtattcgccaaccgccgtgacgaatgccgccggctagaagataag
ctcaagcgccacggtattaaagtcggcttgctgtctggcgagatcgcccagaataagcgc
gtgtccacccttaacgcctttaaagatggcgccattaaggtgctggttgcaaccgatgtt
gccggccgcgggattcatatcgatggtatcagtcatgtggtgaactttaccttgccggag
gagcccgaagattacgttcaccggattggccgcactggccgcgcgggcaatagcggcacg
tctattagttttgcttgtgaagacgacgcctttttgttggagccgattcagcagttgcta
ggcaagccattgccctgtgagcagccgcccgaggcgctgttggccgagatgccgccgatg
gcgccagcgccgcgccgcagcagtagtgatcgctcgtcgcgcagtggcgggggcagtcat
aagcgcggtccgagccggggtaatagccgtggtccgcgaggtggtcatcgctcttcgcgc
tga
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