Gilvimarinus japonicus: R50076_25890
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Entry
R50076_25890 CDS
T10758
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gjp Gilvimarinus japonicus
Pathway
gjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50076_25890 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gjp03019
]
R50076_25890 (recQ)
03400 DNA repair and recombination proteins [BR:
gjp03400
]
R50076_25890 (recQ)
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50076_25890 (recQ)
Messenger RNA biogenesis [BR:
gjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50076_25890 (recQ)
DNA repair and recombination proteins [BR:
gjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R50076_25890 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BFM21540
LinkDB
All DBs
Position
complement(3050666..3052816)
Genome browser
AA seq
716 aa
AA seq
DB search
MNQIALQILQNTFGYEAFRGPQAEIIDTVIAGQDALVLMPTGGGKSLCYQIPALVREGVA
IIVSPLIALMQDQVNALAQLGISAAYLNSSLAFDEVRAIEQGLRQGEIKILYVAPERLIQ
PRTLDMLHELPLALFAIDEAHCVSQWGHDFRSDYLQLSLLHQQFPQVPRVALTATADDRT
RAEIITRLQLEEAAQFVSGFDRPNIQYRIEQKQDARQQLLRFLHNEHPGDAGIVYCLSRR
KVDDTAEWLSKQGFTALPYHAGLPAATRKTHQERFLREDGVIIVATIAFGMGIDKPDVRF
VAHLDLPKSIEAYYQETGRAGRDGQSATAWMAYGVQDVLKLKQMMSQSQGSDDHKRTENH
KLDAMLGLCEITTCRRQALLAYFGERDHAPCNNCDTCLTPPQTFDGTVVAQKALSCCYRT
GQRFGVNHLIDVLLGKANTKVEQFGHEKLSTFGIGVELDVNQWRSVFRQLAARGIIEVDV
AGYGGLLLTEKCRALLKGQESIELRKDIKTTSTGKKARSNAGGSLAGPDKVLWESLRELR
KRLAAEQDIPPYMIFHDATLMEVVSHQPQSLDALGRISGVGASKLEHYGEDFVAAVTAHV
ESLADYAGSAENVRATEHETFALFKAGMDIPAIARQRELTETTVFTHLAGLIEQGQLQVA
EVVELPQPELDAIVDVMLAHDDEPFKLKPVFDALEGVYAYGVLRCVRAGVVREMAG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaatcgccttacaaatactgcaaaacacctttggttacgaggccttccgaggt
ccgcaggctgaaattatcgataccgtcatcgccgggcaggatgccttggtgctaatgccc
accgggggcggcaaatcgctgtgttaccagataccggcgcttgtgcgtgaaggggtggcg
atcatcgtctcgccgttgatcgcgctgatgcaagatcaggttaacgccttggcgcagctg
ggtatcagcgccgcctacttaaactctagcctcgcgtttgatgaggtgcgggccatcgag
cagggcttgcgtcagggcgagataaaaatcctctatgtggcccccgagcgcttaatccag
ccgcgcaccttagatatgctgcacgagctaccgctggcgttgttcgctattgatgaagcc
cactgtgtgtctcagtgggggcacgattttcgctcggattacctgcagttaagtttgttg
catcagcaatttccgcaagtgcctcgggtggcgctaacggccactgctgacgatcgcacc
cgtgccgaaattattacccgtttgcagttagaagaggccgcgcagtttgtcagtggtttt
gaccggcccaatattcagtaccgcattgagcaaaaacaagatgcgcgccaacagttgctg
cgctttttgcacaacgagcatcccggtgatgccggtattgtttactgcttatcgcgccgc
aaagtcgatgacaccgccgagtggctaagcaagcaaggctttaccgcgctgccgtatcac
gccggcctgccggcggccacccgtaaaacccaccaagagcgttttttacgtgaagatggc
gtgataattgtcgccaccattgcttttggcatgggtatcgataaacccgatgtgcgcttt
gtggcgcacctggatttgcccaagagtattgaggcgtattaccaagagacgggtcgcgcc
ggtcgcgacggacaaagcgcgaccgcctggatggcgtacggtgtgcaggatgttttaaag
cttaagcagatgatgagtcagtcgcaaggctcggacgatcacaagcgcaccgaaaaccac
aagctcgatgccatgcttggcttgtgtgagattaccacgtgccggcgccaggcgctgctg
gcctattttggcgagcgcgaccacgcaccctgcaacaattgcgacacctgcttaaccccg
ccacaaacctttgatggcaccgttgtcgcgcaaaaggcgttaagttgctgttatcgcacc
ggccagcgttttggggtgaatcatttaattgatgtgctgctgggcaaagccaataccaaa
gtcgagcagtttggccacgaaaagctcagcacctttggtattggtgttgagctggatgtt
aatcagtggcgctcggtgtttaggcagttggcggcgcggggcattatcgaggtggacgtg
gccggctacggggggttgttgctcaccgaaaagtgccgcgccttattaaaaggccaagag
agtatcgagctcagaaaagacattaaaaccaccagtaccggcaaaaaagctcgcagcaat
gccggcggttcattggccgggccggataaagtgctgtgggagtcactgcgcgagctgcgc
aaacgtttggctgccgagcaagatattcctccttatatgatttttcacgatgccaccctc
atggaggtagtgagtcatcagccgcaaagtttggatgccttggggcgcatctccggcgtg
ggcgccagtaagctggaacactatggtgaagactttgtggcagcggtcactgcccatgtc
gagagcttagccgattacgccggcagcgccgagaatgtccgggccaccgagcatgaaacg
tttgcgttgtttaaagccggtatggacattccggccatcgcgcgccaacgggagcttacc
gaaacgacggtgtttacccacctggccgggttgatagaacagggccaactgcaagtggcc
gaagtggtcgagctgccgcaaccagagctggacgctattgtggatgtgatgctcgcccac
gacgacgaaccttttaagctaaaaccggtattcgacgcactcgaaggcgtgtatgcgtat
ggcgtgttgcgctgtgttagggcgggcgtggtgcgggagatggcggggtag
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