Gilvimarinus japonicus: R50076_27360
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Entry
R50076_27360 CDS
T10758
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gjp Gilvimarinus japonicus
Pathway
gjp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R50076_27360 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gjp03021
]
R50076_27360 (rpoD)
Transcription machinery [BR:
gjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R50076_27360 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
VP1_protrusion
TMPIT
Motif
Other DBs
NCBI-ProteinID:
BFM21687
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Position
3230585..3232396
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AA seq
603 aa
AA seq
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MADDAKQQQSRIKELIARGKEQGYLTYSEVNDHLPEDISDPDQVEDIIQMINDMGIRVFE
QAPNADDLLMADGDSSADEIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREG
EIAIAKRIEEGVRELMHAVAYWPGSVQTIINEYEMVEKEERRLADVIIGWLDPSDEIPTA
GAPAAAKNNDDDDDDEETTSGVDPEEAKERFGALKKQLAKADKVIEKHGRASKQAEKELD
ELGEIFKFFKLPPRQFDPVYLSVRIILDRARREERAIMELCIRKAKMPRKTFIKEFPGNE
SNDEWIGEIIAKKRDYSEALKAYEPEIARAQRKLQQIEEDSGLPLSSIKEINRRMSIGEA
RARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMEMP
EDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIVSPVESATSVGLTESTREVLSG
LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSF
LDE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgctaaacagcaacagtctcgaatcaaagagctcatcgcccgaggcaag
gaacaaggttacttaacctattccgaggtgaacgatcacctgccagaggacatctccgat
ccggatcaggtcgaagacatcatccaaatgatcaacgacatgggtattcgggtgtttgaa
caagcccccaacgccgatgacctgttgatggctgatggcgactcctctgccgatgaaatt
gccgccgccgaagccgccgccgcactggccgccgtggagaccgaagccggtcgcaccacc
gaccccgtgcgtatgtacatgcgtgaaatgggcaccgtggagctgctaacccgcgagggc
gaaatcgccatcgccaagcggatcgaagaaggcgtacgcgagctgatgcacgccgtggcc
tattggccgggctcggttcaaaccatcatcaacgaatacgaaatggtcgagaaagaagag
cgtcgcctggccgacgtgattatcggctggctcgacccgtctgacgagatccctaccgct
ggcgcccccgccgccgcgaaaaataacgacgatgatgatgacgacgaagaaaccacctcg
ggcgttgaccccgaagaggccaaagagcgctttggcgccctaaaaaagcaattggctaaa
gccgacaaagttatcgaaaagcacggccgcgctagcaagcaagccgagaaagagctggac
gagctaggcgagatcttcaaattcttcaaactgccgccacggcagtttgatccggtgtat
ctcagcgtgcgcatcattcttgatcgcgcccgccgcgaagagcgcgccatcatggagctg
tgcatccgcaaagccaaaatgccgcgcaaaacctttattaaagagtttcccggcaacgag
tctaatgacgagtggatcggtgaaatcattgccaaaaagcgcgattactctgaggcccta
aaagcctacgagccagaaatcgctcgcgcccaacgcaaactgcaacaaattgaagaagac
agcggcctgccgcttagcagcattaaagaaattaaccgccgcatgtccatcggtgaggcg
cgcgcccgccgcgccaaaaaagaaatggtcgaggctaacctgcgtctggttatctcgatt
gcgaaaaagtacaccaaccgcggcctgcagtttttggatctaatccaagagggcaacatc
ggcttgatgaaagccgtcgataagttcgaataccgtcgcggctacaagttctcgacctac
gccacctggtggattcgtcaggccattacccgctcgattgcggatcaggcccgcaccatc
cgtattccagtgcacatgatcgagaccatcaacaagctcaaccgcgtatcgcgccaaatg
ctccaggagatgggccgcgagcccaccccagaagaactcggcgagcgcatggaaatgcca
gaagataaagttcgcaaggtgcttaaaatcgccaaagaacctatctcgatggaaaccccc
atcggcgacgacgaagactcgcatctgggcgactttattgaagacagcaccatcgtctca
ccggtagagtccgccaccagcgttggcttaaccgagtcgacccgcgaagtactctcgggc
ctcaccgcccgtgaagcaaaagtactgcgcatgcgctttggtatcgacatgaacaccgac
cacacccttgaggaagtgggcaaacagttcgacgttacccgcgagcgtattcgccagatc
gaagccaaggcactgcgcaaactgcgtcatccttcacgctccgatcatctgcgtagcttc
ctggacgaataa
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