Gilvimarinus japonicus: R50076_34720
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Entry
R50076_34720 CDS
T10758
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gjp Gilvimarinus japonicus
Pathway
gjp03420
Nucleotide excision repair
gjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50076_34720 (uvrD)
03430 Mismatch repair
R50076_34720 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gjp03400
]
R50076_34720 (uvrD)
Enzymes [BR:
gjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50076_34720 (uvrD)
DNA repair and recombination proteins [BR:
gjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50076_34720 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
R50076_34720 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BFM22423
LinkDB
All DBs
Position
complement(4073194..4075389)
Genome browser
AA seq
731 aa
AA seq
DB search
MDAPHLVANLNDAQRQAVTAEAGNQLILAGAGSGKTRVLVHRIAWLVQTQGVSPYSILAV
TFTNKAAREMRARLDESFRDSGTPINTRSMWVGTFHGLAHRLLKAHWKDANLPQNFQILD
SDDQLRLIKRVYQNLGLDAEQWPPRQAQWFINGQKDEGVRAKHMQASSDPFIRTMAAVYA
AYEADCERGGLVDFAELLLRAHELWLNKPAILAHYQGRFPFILVDEFQDTNSVQYAWLRV
LAGESCFVTAVGDDDQSIYGWRGAKVENIRRFSEDYPGTTTVRLEQNYRSTANILNAANA
VIANNAGRMGKQLWTDGEDGEPISLYAAFNEQDEARFIVERINDWALKGNRKDSCAILYR
SNAQSRVLEEALLREAVPYRIYGGQRFYDRLEIKNALSYMRLASRRDDDPAFERVINTPT
RGIGGKTVDEIRAFAREHGCSLWQASEQMLANRVLTARAGNALASFIKLIDTLGEKSSEL
KLDQLAESVLESTGLLEFHKKEKGEKGQARAENLEELITACRVFEAPEDEESVLQQFLDT
ASLDAGEAQADEFEDAVQLMTLHSAKGLEFPLVFMAGVEENLFPHKMSVEDPDRLEEERR
LAYVGITRAMEKLYICYAETRRLHGGETFNALSRFVKEIPNEYLDEVRIKSTVTRPARLQ
GKAPAKPKGLRISDSGSDTGFRLGQRVAHKKFGEGVIVHFEGSGSSTRVQINFNDAGVKW
LVVQYAKLDPI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggatgctcctcacctcgtcgcaaatttaaacgatgcccagcgccaagccgttaccgcc
gaggccggcaatcagctgattcttgccggtgccggcagtggtaaaacccgcgtgctggtg
caccgcatcgcctggctggtgcaaacccaaggcgtatcgccctacagtattttggcggtg
acctttaccaataaggcggcccgcgaaatgcgcgcgcggctggacgagagctttcgcgac
agtggtacacccattaatacccgcagtatgtgggtgggcacgtttcacgggctggcacac
cggctgttaaaagcccactggaaagacgccaacctgccgcagaattttcagattcttgat
agcgacgaccagctgcgactgattaaacgggtgtaccaaaaccttgggttagatgccgag
cagtggccaccgcgccaagcccagtggtttattaatgggcaaaaagatgaaggtgtgcga
gccaagcatatgcaggccagttccgacccgtttattcgcactatggctgcggtgtatgcc
gcctacgaggccgattgcgagcgcggcggcttggtcgactttgccgagctgctgctgcgt
gcccacgagctatggcttaacaagccggctattttggcgcactaccagggccgctttccg
tttatcttggtggatgagtttcaggatactaactcggtgcaatacgcttggttgcgggtt
ctggctggcgagagctgctttgttaccgccgtgggcgacgacgaccagtccatttacggt
tggcgcggcgctaaagtcgaaaacattcgccgctttagcgaggactaccccggcactacc
actgttagactcgaacaaaattaccgctccaccgccaatattcttaacgccgccaatgcc
gttatcgccaataacgctggtcgcatgggcaaacaattgtggaccgatggtgaagacggc
gagccgatctcactctacgccgcgtttaacgagcaggacgaagcgcgctttattgtcgaa
cgtattaacgactgggcattaaagggcaatcgcaaagacagctgcgccattttgtatcgc
tccaacgcccaatcgcgggtgttggaggaagcgctactgcgcgaggcggtaccctaccgt
atttacggcggtcagcgcttttacgatcgtttagaaattaaaaatgccttgtcgtatatg
cgtctagccagccgccgcgacgacgacccggcatttgagcgggtgattaataccccgacc
cgcggcattggtggaaaaaccgtcgatgagattcgcgcctttgcccgtgagcacggttgc
tcgttgtggcaggcctccgaacaaatgctcgccaaccgagtgttaacggcccgcgccggc
aacgcgctggccagctttattaaattgatcgataccctgggtgaaaaaagcagcgaactt
aaactcgatcaattggccgagtcggtgctagagagtacgggcttgcttgagtttcataaa
aaagaaaaaggcgaaaaaggccaagcccgcgccgaaaacctcgaagagctgattaccgct
tgccgggtatttgaagctccagaagacgaagagtcggtactgcaacagtttttagatacc
gcctcgctggacgcgggtgaagcgcaagccgacgagtttgaagacgcggtgcaattaatg
accttacactcggccaaaggcctagagtttccgctggtgtttatggccggggttgaagag
aatctgtttccccataaaatgtcggtagaagatcccgaccgtttggaagaagagcgtcgt
ctggcctatgtgggcattacccgcgcgatggagaagctttatatctgttacgccgagacg
cgccgcctgcacggcggcgaaacctttaatgccctgtcgcgctttgtcaaagagattccc
aacgaatacctcgatgaggtgcgcattaaaagcaccgtcactcgcccagcgcgcttgcaa
ggtaaggcgccggccaaacccaaagggttgcgtattagtgactcgggctccgataccggg
tttcgtttgggtcagcgcgttgcccacaaaaaatttggcgagggcgtgatcgtccacttc
gagggctccggctctagcacgcgggtgcaaattaattttaatgacgccggagttaaatgg
ttggtagtgcagtacgctaaactggatccaatttaa
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