Geobacillus kaustophilus: GK0048
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Entry
GK0048 CDS
T00217
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gka
Geobacillus kaustophilus
Pathway
gka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GK0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gka03400
]
GK0048
Enzymes [BR:
gka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GK0048
DNA repair and recombination proteins [BR:
gka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GK0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BAD74333
UniProt:
Q5L3U5
LinkDB
All DBs
Position
58574..62107
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNL
FQAQKMYDDLVSLLGPEDVFLYSVNEVIAAEMAVASPELKAQRLEIMNHWVQGGKGVVVC
PVAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGI
IDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI
ERIEAGLASSLETMKDEAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKVASLLDY
LPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGGKMIHGVPLSHSFSELLQKHRFQR
VYLSLFLRHVPYAHPQNVVNITCKQMQNFHGQMALLQSEVERWTKANYAVVFLAPNAERV
KKLQSLLQDYEIDALPLARDAALLHGKCQLLEGDLNTGFELPLQKIAVITEEELFKKRVK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKRKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPIKVGLLNRFRTKKQQAETIK
GLKDGTIDMVIGTHRLLSKDVEFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQPD
VVIDVEVDAYIPSTYIADELQKIEMYKRFKAVETLEDIEELREEMVDRFGDYPDEVAYLF
QIAELKVLAKQLGVESMKQHKQQIDILFTEPASKTVEIQRLSDIGRRHGRLFGFGMDGAK
LKIVLYIKEMKPHEWLMILEETLRRLSGVEKEKSVTA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgttgcatcgctatttagctgaaaaccaagatgtccgtacgatcattgaaggg
ctccatgtccgtttgaaggaacagcttgtcgccgggctgtccggatcggcccggtctgtt
tttatttccacgctttacaaggagacaggccggccgctgttagtcgtgtctcacaatttg
tttcaggcgcaaaaaatgtatgacgatctcgtttcgttgctcgggccggaagacgtgttc
ctttattcagtgaacgaagtgatcgccgctgagatggcggtcgccagcccggagctgaag
gcacagcgcttagagattatgaatcattgggtgcaaggcggaaaaggagtcgtcgtctgc
ccggtcgccggcttgcggcgtttgttgccgccgccgtcgctttggaagcagtatttgttc
accttctccgttggacaagagttcgatgtagaacgttgtaaacagaagtttgtgcaaatg
gggtacaaacgggtcggcaccgtttccgcccccggagagttcagcgtccgcggcggcatc
atcgacatttatccattgaccgctgagcttccgtaccgcatcgagctgtttgatacggaa
atcgaatcgattcggacgttcactcctgacgaccaacgttcgcaagggcaaatcgagcgc
atcatgatcgggccggccgatgaaatcattctcgatggcgagacgcggcgccgaggaatc
gagcggattgaagcgggacttgcgtcgagtttggagacgatgaaagatgaggccgccaaa
cagcggatgtatgaacatattcacgctgagcttgagcaattgcgcgaggggcaggaaatc
gagcaacaatataaatatatgtcccttttttatgaaaaggttgcgagtttgctagattac
ctgccagaagacggcgtgctgctcatggatgaaatgagccggctgcaagaggcggcggaa
cggttggaccgcgaagaggcggaatggtatacgagtttgcttgacggcgggaaaatgatt
catggcgtgccgctttcgcattcgttttctgaattattgcaaaaacatcgattccagcgg
gtatacttatcgttgtttttgcgccatgttccgtatgcccacccacaaaacgtcgtcaat
attacgtgcaaacagatgcaaaacttccatgggcaaatggcgcttcttcaatccgaagtc
gagcgatggacaaaggcaaactatgcggtcgtgtttttggcgccaaatgcagagcgggtg
aaaaagctgcaatcattgcttcaagattatgagattgacgcgctgccgctcgcgcgcgat
gcggctttgctgcatggcaaatgccagctccttgaaggagatttaaataccgggtttgaa
ttgccgttgcaaaaaattgccgtcatcacagaagaagagctgttcaaaaaacgggtcaaa
cgcccggtgcgccggcaaaagctgtccaacgccgagcggatcaaaagctacgccgaattg
caagtcggcgactacgtcgtccatgtcaaccatggcatcgggaaatatttaggcatcgag
acgttagaaatcaacggggtgcataaagactatattcatatccagtaccaaggcggcgat
acgctgtatgttccggtcgaccaaatcgatcaagtgcaaaaatacgtcggctcggaagga
aaagagccaaaaatttacaaactcggcggttcggaatggaaaaaggtcaaaaggaaagtg
gaatcatccgtccaggatattgctgaagatttaatcaagctgtacgccgagcgtgaggca
agcaaaggatatgcgttttcgccggacaccgagatgcagcgcgaatttgaagcggcgttt
ccgtatcaagagacggaagatcagcttcggtcgattgaggaaattaagcgtgatatggag
agcgacaaaccgatggaccgcctcctttgcggcgatgtcggctacgggaagacggaagtg
gcgttgcgggcggcgtttaaagccattatggacggcaaacaagtggcctttcttgtgccg
acgacgatcctagcccaacagcattacgaaacggtgcgcgaacggtttcaagggtttccg
atcaaggttggtctgttaaaccgatttcgcacgaaaaaacagcaagccgagacaatcaaa
gggttgaaggacggcacgatcgatatggtcatcggcacgcatcggctgctgtcgaaagac
gtggagtttaaagatttaggcttgctcattatcgacgaggagcaacggtttggcgtggcg
cataaagaaaaaatcaagcagctgaaggcgaacatcgacgtgctcaccttaacggcgacg
ccgattccgcgtacgttgcatatgtcgatgatcggcgtgcgcgatttgtcgatcatcgag
acgccgcctgaaaaccgattcccggtgcaaacgtatgtcatggaatatacgcccgaactc
gtcaaagaggcgattgaacgtgagctcgcccgcgacgggcaggtgtttttcctttacaac
catattgaagacatcgatttgaaagcggaagaaatcgcacagcttgtcccggaagcgcgc
gtcacttacgtgcatggccgcatgtcggaaacggagctcgaatcgaccattttggcgttt
ttggaagggcaatacgatgtgctggtgacgacgacgatcattgaaacgggcatcgatatt
ccgaatgtcaacacgctcatcgtctatgacgccgaccggatgggattgtcgcagctgtac
cagctgcgcgggcgcgtcggccgctccaaccgcgtcgcttatgcgtatttcacctatcgg
aaagataaagtgctcaatgaagcggcagaaaagcggctgcaagccattaaagagtttacc
gagctcggctctggttttaaaattgccatgcgcgatttgtcgatccgcggcgcgggcaac
attctcggcgccgaacagcatggctttatcgactcggtcggattcgatttgtattcgcaa
atgttgaaagaagcgatcgagaaacggcgcggcatcaagcgagaagacgagcagccggat
gtcgtcatcgatgtcgaagtcgacgcctatattccgagcacatacattgcagacgaattg
caaaagatcgagatgtacaagcgatttaaggcagtggagacgctcgaagacattgaggag
ctgcgtgaggaaatggtcgaccgcttcggcgattatccagatgaagttgcgtatttgttc
caaattgcggagttgaaggtgttggccaagcagcttggcgtcgaatcgatgaagcaacat
aagcagcaaattgacatcttgtttactgaaccggcatcgaaaacggtggaaatccagcgt
ctatctgacattggacgccggcatggccgcttattcgggtttggcatggacggagcgaag
ctgaaaattgtgctctatatcaaggaaatgaagccgcacgagtggctgatgattttagaa
gagacgctgcggcggctgtctggggtggaaaaagagaagtcggtgacggcataa
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integrated database retrieval system
