Geobacillus kaustophilus: GK0226
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Entry
GK0226 CDS
T00217
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gka
Geobacillus kaustophilus
Pathway
gka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GK0226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gka03019
]
GK0226
03009 Ribosome biogenesis [BR:
gka03009
]
GK0226
Enzymes [BR:
gka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GK0226
Messenger RNA biogenesis [BR:
gka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GK0226
Ribosome biogenesis [BR:
gka03009
]
Prokaryotic type
rRNA helicases
GK0226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BAD74511
UniProt:
Q5L3G9
LinkDB
All DBs
Position
238745..240148
Genome browser
AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcaaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccgatc
gttgagaaagtgaatgtgaaaaacagcgctgttcaagcgctcgttgtcgcgccgacgcgt
gagctcgccatccaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gttttgccgatttacggcggtcaagatatcgagcggcaaatccgtgctttgaaaaaacat
ccgcacgtgatcgtcgggacgccgggccgtattatcgaccatatcaaccgcgggacgctc
cgccttgagcatgtgcatacggtcgttctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgattcgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttcttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgatgagctggcggaggcgctc
aacttgcgaggctatgcagcggaaggcattcacggtgatttaagccaagcgaaacggctg
tcggtgctgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttccggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccgggcgcgccggcaagacaggggtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgcgatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcagcggaagaattgcttgaagagcacgattcggtaacgattgtcgctgcctgcttgaaa
atgttgacgcgcgagccggatacgacgccggtgcaattgacggaagaaccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagctcgcagccggacgaag
aaacggcggattacggcgcattaa
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