Geobacillus kaustophilus: GK2728
Help
Entry
GK2728 CDS
T00217
Name
(GenBank) formamidopyrimidine-DNA glycosidase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gka
Geobacillus kaustophilus
Pathway
gka03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GK2728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gka03400
]
GK2728
Enzymes [BR:
gka01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GK2728
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GK2728
DNA repair and recombination proteins [BR:
gka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GK2728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BAD77013
UniProt:
Q5KWC3
LinkDB
All DBs
Position
complement(2748396..2749220)
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDPEAFAARMIGQTVRGLERRGK
FLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVY
AKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDES
LFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGAFQHSLF
VYGRKGEPCKRCGTPIEKTVVAGRGTHYCPRCQR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaggtggaaacgatccgtcgtacgcttttgccgcttattgtcgga
aaaacgattgaggatgtgcgcatcttttggccgaacatcatccgccatccgcgagacccc
gaggcgtttgcggcaagaatgatcggacagacggtgcgtggtttggaacggagagggaaa
tttttgaaattcctgctcgaccgcgatgcgctcatttcccatttgcgcatggaagggcgc
tacgccgttgcttctgccctcgagccgctcgaaccgcatacgcacgtcgtgttttgcttc
acggacggcagcgaactccgttaccgcgacgtgcgcaagttcggaacgatgcacgtttat
gccaaagaagaagctgaccgccggccgccgcttgctgagcttgggccggagccgctttcc
ccggcgttttccccagctgtattggcggagcgggcggtgaaaacgaaacggtcggtcaaa
gcgttgctccttgatcagacggtcgtggctgggtttggcaatatttatgtcgacgaatcg
ctgtttcgcgccggcattcttcccggccggccggctgcctcgctctccagcaaagagatc
gagcgcctgcatgaggaaatggtggcgacgatcggcgaggcggtcatgaaagggggaagc
acggtacgcacgtacgtgaacacgcaaggggaagcgggtgcgtttcagcatagcttgttc
gtctacggacgcaaaggagagccatgcaaacgatgcggcacgccgattgaaaaaacggtc
gtcgccggccgcggcacgcattattgcccgcgctgccagcgctag
DBGET
integrated database retrieval system
