Grimontia kaedaensis: K6Q96_00020
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Entry
K6Q96_00020 CDS
T09175
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
gkd
Grimontia kaedaensis
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gkd03032
]
K6Q96_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
gkd03400
]
K6Q96_00020 (gyrB)
Enzymes [BR:
gkd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
K6Q96_00020 (gyrB)
DNA replication proteins [BR:
gkd03032
]
Prokaryotic type
DNA Topoisomerases
K6Q96_00020 (gyrB)
DNA repair and recombination proteins [BR:
gkd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K6Q96_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
USH02486
UniProt:
A0ABY4WSD9
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All DBs
Position
I:3587..6004
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AA seq
805 aa
AA seq
DB search
MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIV
VTIHEDGSVSVKDDGRGIPVDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELTIWRHGNIHQQIYKMGVPEQPLEAIGDTDETGTRIRFWPSDETFSDTT
FHYDILAKRLRELSFLNSGVSIKLVDEREENKQDHFMYEGGIRAFVEHLNRNKTPIHPTV
FHFEHEREDGVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDK
EGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLSE
FLIENPQDSKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKK
GKQEQYIKDDEAMEQYQVSIALENASLFVNQDAPALNGLALEELVKQYNGVMKLIKRMNR
RYPYAMLNELVYQPRLRVDTLSNEGEVRAWIDTLVDVLNKNSTGESQYRAEVKFDEEHQA
YQPELIVRTHGVDHEYLISYDLLNSKEYGRIADLAEALDGLLDDTAYIQRGERKQPVKSF
ADALAWLIKESNRGLSRQRYKGLGEMNPDQLWETTMDPESRRMMRVTIQDAVAADELFTT
LMGDHVEPRRAFIEDNALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaattacgattcatcgagtatcaaggtactcaagggtctggatgcagtacga
aagcgtccggggatgtacatcggtgatactgacgacggtaccggtctgcaccacatggtc
tttgaggtggtcgataactctatcgatgaagctctcgctggtcactgtaatgacatcgtg
gtcaccatccatgaagacggttcggtatctgtaaaagatgacggtcgtggtattcctgtc
gacatccatgaagaagagggtgtatcagcagctgaagttatcatgacggtacttcacgcc
ggtggtaagttcgatgacaactcgtacaaagtctccggtggtcttcacggtgtaggtgtt
tcggttgtaaacgccttgtctgagaagcttgagctgaccatctggcgtcatggcaacatc
caccagcaaatctacaagatgggtgttccagagcaaccgctggaagcgattggtgacact
gacgaaaccggtacccgtatccgtttctggccaagtgacgagaccttctctgatactacg
ttccattacgacatactggcgaaacgcttgcgtgaactgtccttcctgaactctggcgtg
tctatcaagctggttgatgagcgcgaagagaataaacaagaccacttcatgtatgaaggt
ggtatccgggcattcgtagagcacctcaaccgcaacaaaacacctatccacccaactgtg
ttccactttgaacatgaacgcgaagacggtgtgtcggtagaagtgtcaatgcagtggaac
gatggtttccaggaaaacatttactgtttcaccaacaacattcctcagcgtgatggcggt
actcaccttgccggtttccgtgcagctctgacccgtacgctgaactccttcatggacaaa
gaaggctattcgaagaaagccaaagcagcgacttctggcgacgatgcccgtgaaggtttg
actgccgttgtgtctgtgaaagtgccggatccgaaattctcaagccagactaaagacaaa
ctggtttcttcagaagtgaagtctgcggttgagtcagcaatgaacgagaaactgtctgag
ttcctgattgagaacccacaagactcgaagatcgtttgtagcaaaatcattgatgcggcg
cgagcgcgtgaagcggcacgtaaagcacgtgaaatgacccgtcgtaaaggcgcgctggat
ttggctggtctgccaggcaagcttgcagactgtcaggaaaaagatcctgcactgtctgaa
ctctacattgtggagggtgactctgcgggcggttccgcgaagcagggtcgtaaccgtaag
aaccaggctatcctgccactgaagggtaaaatcctgaacgttgagaaagcgcgtttcgac
aagatgctttcttctcaggaagttgccacgctaatcaccgcgctgggttgtggtattggc
cgtgacgagtacaacccggacaaactgcgttaccacagcatcatcatcatgaccgatgcg
gacgtcgacggctcgcacatccgtacgctgctgttgaccttcttctatcgccaaatgcct
gagctgattgagcgtggctatgtctacatcgctcagccgccactttacaaagtgaagaag
ggcaagcaagagcagtacatcaaagatgatgaagcgatggagcaataccaggtatctatc
gcgctggaaaatgcttcactcttcgttaaccaagacgcacccgcactcaatggtctggcg
ttagaagagcttgtgaagcagtacaacggtgtcatgaagctgattaagcgcatgaaccgt
cgttacccatacgcgatgctcaacgagctggtttaccaaccgcgcctgcgtgtagatacg
ctgagcaacgaaggtgaagtacgcgcctggattgatacgctggtggatgttctgaataag
aactcgaccggtgaaagccagtaccgcgctgaggtgaagtttgatgaagagcatcaggct
taccaaccagaattgattgttcgtacccacggcgttgatcatgagtatctcatcagctac
gacctgctgaactcaaaagagtacggacgtatcgctgatttggcagaagcacttgatggt
cttctggatgatactgcatacattcaacgtggtgagcgtaagcaacctgttaagagcttt
gcagatgcgctggcttggttgattaaagaatctaaccgcggccttagccgtcagcgctac
aaaggtctgggtgagatgaaccctgatcaactttgggaaaccaccatggacccagaatca
cgtcgtatgatgcgcgtgaccattcaggatgcggtagcagcagatgagctcttcacgaca
ttgatgggtgatcacgttgaaccacgtcgtgcgtttatcgaagataatgccctgaaggtt
gccaacctcgatgtgtaa
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