Grimontia kaedaensis: K6Q96_03420
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Entry
K6Q96_03420 CDS
T09175
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gkd
Grimontia kaedaensis
Pathway
gkd03030
DNA replication
gkd03430
Mismatch repair
gkd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6Q96_03420 (dnaE)
03430 Mismatch repair
K6Q96_03420 (dnaE)
03440 Homologous recombination
K6Q96_03420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gkd03032
]
K6Q96_03420 (dnaE)
03400 DNA repair and recombination proteins [BR:
gkd03400
]
K6Q96_03420 (dnaE)
Enzymes [BR:
gkd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K6Q96_03420 (dnaE)
DNA replication proteins [BR:
gkd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K6Q96_03420 (dnaE)
DNA repair and recombination proteins [BR:
gkd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K6Q96_03420 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
USH03082
UniProt:
A0ABY4WX02
LinkDB
All DBs
Position
I:705283..708762
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQST
GVKPIIGADFKMQTDAFGEDLCQITVLAANNIGYKNLTLLISKAYLRGHVQHQPVIDQDW
LVELKEGLIILSGGRRGDLGKALLKGNAGLANQCAAFYQTHFPDAYYIELMRTGRPDEEA
YLHFALDFATEHNLPVVATNEVCFLTADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQHL
RSEEEMCELFHDIPEALANTVEIAKRCNVTVRLNEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPDKEERLKRRPEYDERLEVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFVAEPQ
LGEIYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLERSGQEPVRIESIPLEDAASFRVL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDATWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFESGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIVGLVEECRRMKLTMLPPDVNAGLYRFNVNEKGEIVYGIGAIKG
VGEAPIENIIKARQEGGYFRDLFDFCARIDTKKVNKRVIEKLIQSGAMDRLGPHRAAMTA
SLDDALKSASQHHQAEAFGQTDMFGVLTDAPEEVEHKYAKVPPWPDKVWLEGERETLGLY
LTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAARVMTTKRGTRIGILTLDD
RSGRMEVMLFSDALEKYLDLIEKDRILVVSGQVSFDDFNGGLKMSAREVLDISQAREKYL
RGLAISVTDRQIDNKFFERFSEILEPHRAGTVPVNLYYQRDDARAKLVLGTEWRITPDDK
LIDDLKTLLGDKQVELEFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccacgctttattcaccttcgtgttcacagtgacttttctatggtcgatggc
ctcggcaaggtgccgccattggtcaaaaaagtggccgagctaggcatgccggcgatggca
ttgacggactttactaacctatgcggcttggtgaagttctataacacggcgcagagtacg
ggtgtgaaaccgattatcggcgctgactttaaaatgcagacagacgcttttggtgaagat
ctctgccaaattactgtactggcagccaacaacatcggttataaaaaccttacgttactg
atttcaaaagcctatcttcgtggccatgtccagcatcaacctgttattgatcaggattgg
ctggttgagttgaaagaaggccttatcatcctttcgggtggacgtcgtggcgatctgggc
aaagccctactcaaaggtaacgcgggtctggctaatcaatgcgcagccttctatcaaact
catttccctgatgcgtattacatcgaattaatgcgaacagggcgtccggatgaagaagct
tacctgcattttgcgctcgattttgcgaccgaacataatcttcccgttgttgcgaccaat
gaggtgtgcttcctgactgcggatttgtttgatgcccatgaaatccgtgtcgcgattcat
gatggttatacgcttgaagatccccgccgcccgaaaaactatagccctcagcagcatctt
cgttcagaagaagaaatgtgcgagttgttccatgacattcctgaggcgttggcaaacaca
gtagaaattgccaagcgttgtaacgtcactgttcgactcaacgaatacttcctgcccgcc
ttcccaaccgagggcatggaagaaactgaattcttggtaatgaagtcgcgggaaggtttg
gaagagcgtctggaattcctgttcccggataaagaagagcgcctgaagcggcgacctgaa
tacgatgagcgtcttgaagtcgaactggaagtgatcaacaacatgggtttccccggttac
ttcctcatcgttatggagttcatccagtggtcgaaggacaacgcgattcctgtggggccg
ggccgtggttccggtgcaggctcgctggtggcctatgcgcttaaaatcaccgaccttgac
ccgctggaatacgatctgctgttcgaacgattcctgaaccctgaacgtgtttccatgccc
gactttgacgtcgacttctgtatggataaacgcgatcaggtgattgaccacgttgctgaa
atgtatgggcgtgatgcggtatcccagatcattaccttcggtaccatggctgccaaagcg
gtaatccgtgatgtggggcgtgttcttggccacccttatggttttgtcgaccgcatttct
aaactggtgccgcccgatcctgggatgacattggaaaaagcctttgtggcagagccacag
ctgggtgaaatctacgaagcggatgaagaagtccgcgagcttatcgatacctgccgtatt
ctggaaggctgtacacgaaatgccggtaagcacgcgggtggtgtggttatctcgccaacc
acaattaccgattttgctcctatctatgctgatgctgaaggtcacttcccggttacccag
ttcgataagaacgacgtagaaaccgcgggcctcgtgaagtttgacttcttaggtctgcgt
accctgaccatcatcgactgggctttgggactgattaatccgcgcctggagcgtagcggt
caggagccggtgcgtattgagtcgattccgctcgaagatgcggcttcattccgcgtattg
cagaactcagaaaccacggcggtattccagctcgaatcacggggtatgaaagagctgatc
aagcgccttcaacctgactgtttcgaagatatcatcgcattggttgctctgttccgtccc
ggcccgttgcaatcaggcatggtagataactttatcgaccgtaagcacggacgcgaagag
atctcataccctgatgcgacctggcagcatgagtcactaaaagaaattctggatccaacc
tacggcatcattctttaccaagagcaagtcatgcagattgctcaggtattgtctggctat
acccttggcggtgcagacatgcttcgtcgtgcaatgggtaagaaaaagccagaagagatg
gcaaagcagcgcgcgacgtttgaaagcggtgcaatcgccaacggtgttgacggtgagctg
tcgatgaagatctttgacctggtggagaaattcgcgggttacggcttcaacaaatcgcac
tctgcggcctacgcactggtttcctatcaaacactttggttaaaaacacactatccggcg
gaattcatggcagcggtaatgaccgcggatatggataacaccgataaaatcgttggcctg
gtagaagagtgtcgccgaatgaaactgaccatgttgccaccagatgtgaatgcaggtctg
taccgtttcaacgtgaatgaaaaaggcgaaattgtttacggtatcggtgcaatcaagggc
gtaggtgaagcaccaattgaaaacatcatcaaagcgcgtcaagagggcggttacttccgc
gatctcttcgacttctgtgctcgcatcgacaccaagaaggtgaacaagcgtgtgattgaa
aaactgattcagtcaggcgccatggatcgattaggtcctcaccgagcagctatgacagct
tctttggatgatgcattgaaatcagcaagccaacaccatcaggcagaagcttttggtcaa
actgatatgttcggtgtactgacggatgctccggaagaagtggagcacaaatatgcgaaa
gtcccgccttggccagacaaagtctggttggaaggtgaacgcgagacgttagggctttac
ctcaccgggcacccgatcaatagctatgtaaaagagctgaagcattacattacctggcgc
ttagaagatgcacatgccaccaaacgtgatgtggtatcgacagtggctggtcttgtcatc
gccgcacgggtgatgacaaccaagcgaggcacccgtatcggtatcctgactttggatgac
cgttcaggacgcatggaagtgatgctgttctcagatgcgctagaaaagtatctggatctc
atagaaaaagacagaattttggtggtatcgggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcacgagaagtgcttgatatctcccaagcgcgtgaaaagtacctg
cgtggtcttgctatctcagtgaccgataggcaaattgataacaaattttttgaacgattc
agtgagattctggaaccgcaccgtgcgggaacggttccggtcaacctttactaccagcgt
gacgatgctcgcgcaaagttggtcttaggtacagagtggcgtattacgccagacgacaaa
ctgatcgatgatttaaaaacgctgctcggcgataaacaggtcgagctggaatttgattga
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