Grimontia kaedaensis: K6Q96_05940
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Entry
K6Q96_05940 CDS
T09175
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gkd
Grimontia kaedaensis
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gkd03032
]
K6Q96_05940 (topA)
03400 DNA repair and recombination proteins [BR:
gkd03400
]
K6Q96_05940 (topA)
Enzymes [BR:
gkd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K6Q96_05940 (topA)
DNA replication proteins [BR:
gkd03032
]
Prokaryotic type
DNA Topoisomerases
K6Q96_05940 (topA)
DNA repair and recombination proteins [BR:
gkd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K6Q96_05940 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_2
Peptidase_C92
DUF5795
Toprim_4
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
USH04083
LinkDB
All DBs
Position
I:1248936..1251557
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTGAAQGGKKATPVSTKGLSAEE
KERIKKEKDKNALINKMGVDPYRNWKANYQILPGKEKVVQELKTLAEKADHVYLATDLDR
EGEAIAWHLREIIGGDESRFKRVVFNEITKNAIQQAFEAPGELNMDGVNAQQARRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREHEIKAFIPMEYWDIHTDTTTASQNAL
RLVVAQQNREAFKPLNEEQAMAATAALQKATYKVVDREDRPTSSKPSAPFITSTLQQAAS
TRMGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVEAARSFIGSEYGDNYLPSSANV
YGSKGNAQEAHEAIRPSSVDVKADDLQGMDPDAHRLYDLIWRQFVSCQMVPAKYDSSTIT
VEAGEFTLKAKGRTLRFDGWTRVQRPMGKNEDTTLPHVDVGEILSLEKVDPKQHFTKPPA
RYTEAALVKELEKRGIGRPSTYAAIISTIQDRGYVRVEQRRFYAEKMGEIVTDRLDDSFA
DLMDYDFTARMEEHLDQIAMGSEDWKNVLNNFFKDFTGDLEKAELEEGEGGMKPNSIVMT
DIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLMDEEGIVNVLEEDVETAAL
RAKKRCPKCETAMDAYLIDQDRKLHVCGNNPSCDGYVVEKGEFKLKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFLAASNFPKSRETRAPLVEELARFKERLPEKFKYLADAPSEDPDGRKAVVRFSRKSK
ENYVRTEDDGKPSGWTGLFIDGKWEITDKRKKK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctcgttatcgtggagtccccggcaaaggcaaaaacgatcaataaatat
ctgggcaaagacttcatcgttaaatcgagcgtaggtcatgtccgagatctgcctaccggt
gccgcgcaaggcggcaagaaagcaacgccagtttcaaccaaagggttgagtgcggaagag
aaagagcgcatcaaaaaagagaaagacaaaaacgcgctgatcaacaaaatgggtgtcgac
ccataccgcaactggaaagcaaattatcaaatcttgccgggcaaagaaaaagtcgtgcag
gaactgaaaacgttggcagagaaagctgaccacgtttatctcgcaacggatttggaccgc
gagggagaggcgattgcctggcacttgcgggaaatcattggcggtgacgaaagccgcttc
aagcgcgttgtgtttaacgaaattaccaaaaacgcaatccagcaggcgttcgaagcaccg
ggcgagctgaacatggatggcgtaaatgctcagcaggcgcgtcgtttcctcgaccgtgtt
gtaggctttatggtgtctccgctgctttggaaaaaagtcgcgcgtggtttgtctgcaggc
cgtgttcagtcagttgcagtgaagctgctggttgagcgtgagcacgaaatcaaagccttt
attccaatggaatactgggacattcacactgacaccaccacggcgagccaaaatgcgtta
cgtctggttgttgcccagcaaaatcgtgaagcgtttaaaccgctgaacgaagagcaggca
atggcagcaacggcggcgttgcagaaagcgacttacaaagtggttgaccgtgaagaccgt
ccaacctcaagcaagccgtctgcaccatttattacctcgacgctgcaacaagcggcgagc
acccgcatgggcttcggtgttaagaagaccatgatgctggctcagcgtctgtacgaggca
ggttacatcacctacatgcgtactgactcgaccaatctcagtaaagaagcggttgaagct
gcgcgcagtttcattggctctgagtatggtgacaactatctgccatcttcagcgaatgtg
tacggctcaaaaggtaatgcacaggaagcgcacgaagcgatccgtccttcaagtgtggat
gtgaaagctgatgatcttcagggcatggatccagacgcacatcgtctttacgaccttatt
tggcgtcagtttgtgtcttgtcagatggtgccagcgaagtacgactccagcaccattact
gtggaagcaggtgaatttaccctgaaagcaaaaggccgcaccttacgctttgatggttgg
acacgtgttcaacggccgatgggtaaaaacgaagacaccacgttgccacatgttgatgtg
ggcgagattctgtctttggaaaaagtggatccgaagcaacacttcaccaagccacctgca
cgctacactgaagctgcactggttaaggaacttgaaaagcgtggcattggccgtccatcg
acttatgcagcgatcatttctacgattcaggatcgtggttatgtgcgtgtagagcagcgt
cgtttctacgcagagaagatgggtgagatcgtgacagaccgtctggatgacagcttcgct
gatctgatggactacgacttcacagcacgtatggaagagcatctcgaccaaatcgcgatg
ggttcagaagattggaaaaatgttctgaacaacttcttcaaagacttcactggcgatctt
gaaaaagcagagctggaagaaggtgaaggtggcatgaagcctaacagcatcgttatgacc
gacatcgactgtccaacctgtggccgtaagatgggtatccgtactgcatcgaccggtgta
ttcctcggttgttctggttatgcactgccgccgaaagagcgttgtaaaaccaccatcaac
ctgatggatgaagaaggcatcgttaacgttcttgaagaagacgttgaaaccgcagcgctg
cgtgcgaagaaacgttgtccgaagtgtgaaacggcgatggatgcttacctcatcgaccaa
gaccgcaagttgcacgtttgtggtaacaacccaagttgtgatggctatgtggttgagaaa
ggtgagttcaagctaaaaggttacgacggcccggtggtcgagtgtgacaagtgtggttcc
gacatggtgctgaaaaacggccgtttcggtaagtacatggattgcaccagcgaaacctgt
aagaacacccgtaagatcctgaagaacggcgaagtcgcgccaccgaaagaagatccagtt
cacttccctgaactgccttgtgagaattcagacgcgtactttgtgcttcgtgacggtgca
tcaggtctattcctggcggcaagtaacttcccgaaatcgcgcgaaacccgtgcacctttg
gttgaagaactggcacgtttcaaagaacgcctgcctgagaagttcaaatatctggcagat
gcaccatcagaagatccagatggtcgcaaagcagtggtccgctttagccgtaagagcaaa
gagaactacgtgcgtaccgaagatgacggcaagccttctggctggacgggtctgtttatc
gacggtaagtgggaaatcactgacaaacgcaagaagaagtaa
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