Grimontia kaedaensis: K6Q96_14185
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Entry
K6Q96_14185 CDS
T09175
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
gkd
Grimontia kaedaensis
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gkd03000
]
K6Q96_14185
Transcription factors [BR:
gkd03000
]
Prokaryotic type
Helix-turn-helix
Other families
K6Q96_14185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
Mg_chelatase
AAA
HTH_17
HTH_29
AAA_5
HTH_7
HTH_22
HTH_30
HTH_50
HTH_IclR
TrmB
HTH_23
YdaS_toxin
HTH_1
Motif
Other DBs
NCBI-ProteinID:
USH02003
UniProt:
A0ABY4WQY4
LinkDB
All DBs
Position
I:complement(3148665..3149999)
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AA seq
444 aa
AA seq
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MGMQFRSEAVPSSLVVVGGTYEPWLATLEQAGWRCHRCYDLRAAQSLLQDIGPCIGIVDI
SHDDFSLNGVASLVNRNKQVRWLALIREDQLNNDAICQFIVSFCIDYFTSPIPDSQLMST
IGHQLGMLKLERHVWPQLGDHSDMGLLGKTSVMKKLRDQVRRVAPTDVSVLINGESGTGK
ELVGMAIHNASTRAKGPFISVKCSALPEKLIQNELFGDGTTEGKVQQAHQGTLFLDEIGD
LPLNLQANLLHLLQDGTVETHDDKYSKEIDVRVIAATHMDLEKAVAEGQFREDLFYRLNV
LRISVPSLKERSADIPELAEHFLLKFARQYNTQARTFSEEANKILTNYSWPGNVRELINQ
VKRAVLLADNLVIEAEHLDLPRQGDYKQSLRKIREESERDALLAVLESNNGQVSAAAKEL
GVSRATMYRLLNKHSLIPAPRSFR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggtatgcaattcagatctgaggcggttccaagttctctcgtcgtagtgggcggaact
tacgaaccatggctggcaacactggaacaagcaggttggcgttgtcaccgctgttatgac
ctcagagcagcacaatctctccttcaggacattggtccttgcattggtattgtggacatc
agccacgatgatttcagtcttaacggtgtcgcatcactggtaaaccgcaacaagcaggtt
cgctggttggcgctgatccgcgaagatcaactcaacaatgatgcaatttgtcagttcatc
gtgagcttctgcatcgactacttcacctctccaattccagatagccaactgatgagcacc
atcggtcaccagctgggtatgctgaagcttgagcgccacgtatggcctcaactgggcgac
cacagtgacatgggtctactgggtaaaacgtcagtgatgaagaagctgcgcgatcaggtt
cgtcgtgttgctccgacggatgtgtcggtgctaatcaacggtgaaagcggtacaggtaaa
gagctggtgggtatggcgattcataacgcctcaacccgtgcgaaaggcccgtttatttca
gtgaaatgtagtgcgctgccagaaaagctcatccaaaatgagctctttggcgatggcaca
actgaaggcaaagtacagcaagcacaccaagggacgttgttcctggatgaaatcggcgac
ttgccattgaaccttcaggcgaaccttctgcacttactgcaagacggtacagtggaaaca
cacgacgacaaatactcgaaagaaattgacgtgcgtgtgattgcggcaacacacatggat
ctggagaaagcagttgctgaaggccagttccgtgaagatttgttctaccgcctgaatgtt
cttcgtatctcagtgccttcgctgaaagagcgtagtgcagatattccagagctggctgaa
cacttcctgttgaagtttgcacgtcagtacaacactcaggcgcgtaccttctctgaagaa
gccaacaaaatcctgaccaactacagctggccaggaaacgtacgcgagctgattaaccag
gttaaacgtgcagtactgctagcagataatttggtgattgaagcagagcatcttgatctg
ccgcgtcagggcgattacaaacaaagtcttcgtaagattcgtgaagaatctgagcgcgat
gcactgctcgctgttttggaaagcaacaatggtcaggtgtctgcggcagcgaaagagttg
ggtgtatcccgtgcgactatgtaccgtctgttgaacaagcacagcttgattccagcaccg
cgtagctttcgctaa
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