Grimontia kaedaensis: K6Q96_20905
Help
Entry
K6Q96_20905 CDS
T09175
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gkd
Grimontia kaedaensis
Pathway
gkd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6Q96_20905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gkd03019
]
K6Q96_20905
03009 Ribosome biogenesis [BR:
gkd03009
]
K6Q96_20905
Enzymes [BR:
gkd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6Q96_20905
Messenger RNA biogenesis [BR:
gkd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6Q96_20905
Ribosome biogenesis [BR:
gkd03009
]
Prokaryotic type
rRNA helicases
K6Q96_20905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USH04210
UniProt:
A0ABY4WZ06
LinkDB
All DBs
Position
II:complement(906051..907922)
Genome browser
AA seq
623 aa
AA seq
DB search
MQDTVTEFRQLDLAENILSALDAIGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAF
SLPLLNKLDLKQHKPQAIVMAPTRELAIQVAAEVKQLGQNINGLKVLEIYGGASIVDQMR
ALRSGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPAS
AQRVLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI
ERVTSTRMEEVQLPLRDKVAEARLARLAADLAEQKESDSLEAFVGLIEKLQEQIEVDTAT
LAAMLLQRQQGKRPLFYNGPDPMIAAMERDSRRRESRRDDRGPRDRSDRGERRSYNAADW
DTYQLQVGRDQGVQVKDIVGAIANELGLEKQFIGSIKLATGHTYVQLPKKMPKEILGQLK
QLRIRQKATDAQLVEGHVDMSPPRRRNGGDRNGGDRGQRRFDDRGSRGGNRGEGRGDKGG
RRFDRDRGGDKRSFRGERRHADA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatactgttactgaatttcgccaattagatctggctgaaaacattctttctgct
cttgacgcaatcggctttgtagcgccgactcctattcaggcagcttcgattccccttcta
cttaccggtgttgatgcactgggtaaagcacaaacaggcaccggtaaaacagcagcattt
tctctgccactgttgaataagctggatctgaaacaacacaaaccacaagccatcgttatg
gctccaactcgtgaactggctatccaggtagcagctgaagttaagcaactaggtcaaaat
atcaatggcctgaaagtgcttgagatttacggtggtgcttcaatcgttgatcaaatgcga
gcgctgcgcagtggtgctcacattgttgttggcacccctggccgtgttaaagacctgatt
aatcgtgaacgtctgcaactggacgaagttcataccttcgttctggacgaagctgacgaa
atgctgaaaatgggcttcgttgacgacgtaacctggatcatggaacaagcaccagcatca
gcgcaacgcgtgctgttctctgcaaccatgcctccaatggttaaagaaattgttgaccgc
ttcctgcgcgaaccagcacgtatcgacgtagctggcagcaaccgtactgttgagaaagtt
gaacagcagttttgggttgttaaaggtgttgagaaagatgaagcaatgtctcgtctgctt
gaaactgaagaaactgatgcgtctatcgtattcgttcgtacgcgtcaggataccgagcgc
ctggctgattggctgagcgcgcgtggcttcaaagctgctgcgctgcacggtgatattcca
cagtcacttcgtgagcgtactgttgaccatatcaaacgtggtgtaattgacattctggta
gcgaccgacgtagtcgcacgtggtcttgatgtgccgcgcatcactcacgtattcaactac
gatattccgttcgatgttgagtcatacatccatcgtatcggtcgtaccggtcgtgcggga
cgtgcaggtaaagcaatcctgctggttcgtactaaccaaatccgtatgctgcgtactatt
gagcgcgtaacttctactcgcatggaagaagttcaacttccactacgcgataaagttgct
gaagcacgtttggctcgtctcgctgctgatctggcagagcagaaagagtctgatagcctg
gaagcatttgttggcctgatcgagaaactacaagagcaaatcgaagttgatactgcaacg
ttggcggctatgctgcttcaacgtcagcaaggcaaacgtcctttgttctacaacggtcca
gatccaatgatcgcggccatggaacgtgatagccgtcgccgtgaatcacgtcgtgatgac
cgtggaccacgtgatcgttcagatcgtggcgagcgtcgcagctacaatgcagcagactgg
gacacttaccagttgcaagttggtcgtgaccagggcgttcaggtgaaagacatcgttggt
gctatcgcaaacgagctgggtcttgagaagcaattcatcggttcaatcaagctggctaca
ggtcatacctacgttcagctgccaaagaaaatgcctaaagaaattctgggtcaactgaag
caactgcgtatccgccagaaagcaactgacgcccaactggttgaaggtcacgtagacatg
tctccaccacgtcgtcgcaatggcggtgaccgcaacggtggtgatcgtggtcaacgtcgc
tttgatgaccgtggctctcgcggtggcaaccgtggcgaaggtcgtggtgacaaaggcggc
cgtcgtttcgaccgtgaccgcggtggcgataagcgttcgttccgtggagagcgccgtcac
gcagacgcataa
DBGET
integrated database retrieval system
