Grimontia kaedaensis: K6Q96_20915
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Entry
K6Q96_20915 CDS
T09175
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gkd
Grimontia kaedaensis
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gkd03016
]
K6Q96_20915
Enzymes [BR:
gkd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K6Q96_20915
Transfer RNA biogenesis [BR:
gkd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K6Q96_20915
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
USH04212
UniProt:
A0ABY4WZ09
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All DBs
Position
II:910128..912125
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AA seq
665 aa
AA seq
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MFQDNPLLAQLKQQIKETIPKKEGSIKATEKGFGFLEVDNKTSYFIPPAYMKKVMHGDKV
VALIRTEKEKEVAEPDELIEQSVERFIGRVKMIRDKLNVVPDSPQIKDAIRAKTKKGLSR
DALSEGDWVVATLIQHPLNGDNNFFCEISKKITDSDDKIAPWWVTLAKHDLPNQEPAPQD
NWAMLDESLVREDLTHLPFITIDSESTKDMDDALHTVANEDGTFTLTIAIADPTAYVAQG
TDLDKEARERGFTIYLPGRNIPMLPRQLSDDLCSLREEEVRPALCCRVTVLADGTIIEDA
QFFSATIKSQGRLAYDNVSDLLETGLCDKWQPTSIISEQVNALHALAKARMTWRETNAVT
FPDRPDYRFELSEDNDVVAIHVDPRRIANRMVEEAMITANICAGRALREHFGFGVFNTHA
GFSPEKMADAVELINNNDGNVSAEQLETIEGFSALRRWLNEQETSYLDNRIRKYQSYSEI
GNAPGPHFAMGLDVYATWTSPIRKYGDMVNHRLLKAIIRGENAATTPDEMIGEELALHRR
HHRMAERDVADWLYVRLLKDSVAKKTTFTAEIFDINRAGMRVHLLENGAMAFIPAPLIVD
NKKRIECNGDMGTISIDGVKEFQLGDTIEVVLAEVKEPTRSIVGKPTREFAVIAEKTEEA
VEKSE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccattacttgcacagctaaaacagcaaattaaagagaccattccg
aagaaggaaggctctatcaaagcaaccgaaaaaggtttcggctttctagaggtagacaac
aaaaccagctacttcatcccacctgcatacatgaaaaaagtcatgcacggtgacaaggtc
gtcgcgcttatccgcactgaaaaagaaaaagaagtggcagagccagacgaactgattgaa
caatcggtagaacgtttcattggccgggtaaaaatgattcgcgacaagctgaatgtcgta
ccggacagtcctcaaatcaaagatgcaatccgagcaaagactaagaaaggccttagccgt
gatgcgctgtctgaaggtgattgggttgtagccactcttatccagcacccgttgaacggc
gacaacaacttcttctgcgagatcagtaaaaaaattactgactcagatgacaaaattgcc
ccttggtgggtaacactggcaaagcatgatttgccaaatcaagaaccagcaccacaagat
aactgggcgatgctggacgagtcattggttcgagaagacctgacccaccttccgtttatt
actatcgacagcgaatccactaaagacatggatgacgcgctgcacacagtggctaacgaa
gacggaacctttactctaactatcgccattgctgacccaacagcttacgtggcacaaggc
actgacctagataaagaagcgcgtgagcgcggtttcaccatctacctaccgggtcgaaac
attccaatgctgccacgccaactgagtgacgatctgtgttcactgcgtgaagaagaagtt
cgtccagcactgtgttgccgcgtaacggtattggctgacggcacgatcatcgaagatgca
caattcttctctgcaaccattaaatctcagggccgtctggcttacgataatgtttccgat
ttgctggaaacgggtttgtgtgacaaatggcagccaacgagcatcatttcagaacaggtg
aatgcactacatgcactggcaaaagcgcgcatgacttggcgtgaaaccaatgcagtgacc
ttcccagatcgcccagactaccgttttgaactgagcgaagacaatgatgttgttgctatc
cacgtagaccctcgccgtatcgcaaatcgcatggttgaagaagcgatgatcaccgcaaac
atttgtgctggtcgtgcgcttcgcgaacactttggctttggcgtattcaacacccacgct
ggtttctctccagagaagatggctgacgcagttgagctcatcaacaacaatgatggcaac
gtttcagctgaacagctcgaaactatcgaaggtttcagtgctcttcgtcgttggctgaac
gaacaggaaaccagttatctggataaccgtattcgcaagtaccaatcttatagcgagatt
ggtaatgcccctgggcctcacttcgcaatgggtcttgatgtttacgcgacctggacatca
ccaatccgtaaatatggcgacatggtaaaccaccgcctcttgaaagcgattatccgtggt
gaaaatgccgcaactacgcctgacgagatgattggcgaggagctagcccttcatcgtcga
catcatcgtatggctgaacgcgatgtggctgactggctctatgtccgactgctaaaagat
agcgtcgccaagaaaaccacctttacagcagaaatcttcgacatcaaccgtgcaggtatg
cgtgtacacttgttggaaaacggtgcgatggcatttattcctgcaccgctaattgtcgat
aacaagaagcgcattgaatgtaatggtgatatgggcactatctctattgatggcgtcaaa
gagttccagttgggcgataccatcgaagtcgttcttgctgaagtcaaagagcctacacgc
tcaattgttggtaaaccaacccgcgagtttgcagtgattgcagagaaaacggaagaagcg
gtagagaaaagcgagtaa
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