Gallaecimonas kandeliae: PVT67_01565
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Entry
PVT67_01565 CDS
T09225
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVT67_01565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gkn03021
]
PVT67_01565 (rpoC)
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_01565 (rpoC)
Enzymes [BR:
gkn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVT67_01565 (rpoC)
Transcription machinery [BR:
gkn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVT67_01565 (rpoC)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVT67_01565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WKE65966
LinkDB
All DBs
Position
344535..348749
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLEKGAMLTEDQYLDALEQWGDEFDARM
GAEAVQELLKRIELEKEIEQMREELPSINSETRRKKVTKRLKLMEAFFKSGNKPEWMIMA
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRERINAKGEGMVLRGPKEAEKVYRAG
LADLHARVKARISHWVETEDGDYVEDIRLTDTTVGRAILSLILPKGMPFELINQNMGKKQ
ISRLLNACYRRLGLKDSVIFADQLMYTGFHYATLAGASVGIDDMVIPDAKAAIIAEAEAE
VAEIQEQFSSGLVTAGERYNKVIDIWSTANERVSKAMMSNLSTEEVENRDGEMETQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITESDCGTLEGLWMTPLIEGGDVVEPLRERVL
GRVVCEDVMIPGSDEVLLPRNTLLDEAKVDLLEAHSIDQVKVRSVITCDTDFGVCAHCYG
RDLARGHIINGGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENSVQVKNSGSLKL
HNAKFVVNSDGKIVITSRSTELTVTDENGRERERYKLPYGAVLTKQDGEAVAAGDIVANW
DPHTHPIITEVKGQIKFVDMLDGVTMSRQTDELTGLSSIVILEPSQRPTAGKEMRPMVKL
VDEKGKDVNIAGTDIPAQYFLPGNAIVNLDDGVMVNVGDALARIPQETSKTRDITGGLPR
VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPSEGNAYEEMIPKWRQLNVFEG
EQVQRGEVIADGPEAPQDILRLRGIEAVARYIVNEVQDVYRLQGVKINDKHIETIVRQML
RKCTITNPGDSELLEGETVEVARVKIANRDLENAGKQPASFERQLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKADDLRGLKENVIVGRLIPAGTGYSYHQERNRQRAKGVAVAE
PQMTADDAEKALTDLLNADLGSEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaacagcagaacaagaccgaagaattcgatgccatc
cgcatcggtcttgcttctcctgacatgattcgctcttggtcttacggcgaagtgaaaaag
ccggagaccatcaactaccgtaccttcaagccggagcgtgacggtcttttctgtgcccgt
atcttcgggcccgtgaaggactacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgtggcgtgatctgtgaaaaatgtggtgttgaagtcactctgaccaaagtgcgccgtgag
cgcatgggtcacatcgagctggccagccccgttgcccacatctggttcctcaagtccctg
ccgtcccggatcggcctgctgctggacatgaccctgcgtgatatcgagcgcgtgctttat
ttcgaaagctacgtcgtcatcgagccgggtatgaccaacctcgaaaaaggcgccatgctg
accgaagatcagtatctggatgccctcgagcagtggggcgacgagttcgacgcccgcatg
ggtgccgaagccgtgcaggagcttctcaagcgtatcgaactcgagaaagaaatcgagcag
atgcgtgaagagctgccctccatcaactccgagacccgccgtaagaaggtgaccaagcgt
ctcaagctgatggaagccttcttcaagtccggcaacaagccggagtggatgatcatggcc
gtgctgccggtgctgccgccggatctgcgccccctggtccccctggacggtggccgtttc
gcgacttccgatctgaacgatctgtaccgccgcgtcatcaaccgtaacaaccgtctcaag
cgcctgctggacctggccgcgcctgacatcatcgtgcgtaacgaaaagcgcatgctgcag
gaagcggtcgacgcgctgctggataacggccgtcgtggccgtgctatcaccggctccaac
cgccgtccgctcaaatcccttgccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactccggtcgttccgttatcaccgtaggtccgacc
ctgcgcctgcatcagtgcggcctgcccaagaagatggcccttgagctgttcaagcccttc
atctacggcaagctggaagcccgtggcctcgccaccaccatcaaagccgccaagaaaatg
gtcgagcgcgaagtggccgaggtgtgggacgttctggacgaagtgatccgcgaacacccc
gtgctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgtttgagcccgtc
cttatcgaaggtaaggccatccagctgcaccccctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctcgaagcc
cgtgcgctgatgatgtccaccaacaacatcctgtctccggccaacggtgaacctatcatc
gttccctctcaggacgtggtactgggcctctattacatgagccgcgagcgcatcaatgcc
aaaggtgaaggcatggtgctgcgtggtcccaaggaagccgagaaggtctaccgcgccggc
ctggctgacctgcacgctcgcgtcaaggcccgtatcagccattgggtggaaaccgaagac
ggcgactacgtcgaagacatccgtctgactgacactactgtcggccgcgccattctgagc
ctgatcctgcccaagggcatgcccttcgagctgatcaaccagaatatgggtaagaagcag
atttcccgtctgctgaacgcctgttaccgtcgcctgggcctgaaggactccgtcatcttc
gctgaccagctgatgtacaccggtttccattacgccaccctggccggtgcctccgtcggt
attgacgacatggtcatccccgatgccaaggccgccattatcgcggaagcggaagcagaa
gttgccgagatccaggagcagttctcctccggtctggtgaccgccggcgaacgctacaac
aaggttatcgacatctggtccaccgccaacgagcgggtgtccaaggccatgatgagcaac
ctgtccactgaagaggtggaaaaccgcgacggtgagatggagacccaggcctccttcaac
tccatctacatgatggccgactccggtgcccggggtagtgctgcccagatccgtcagttg
gccggtatgcggggcctgatggccaagcccgacggctccatcatcgagacccccatcacc
gcgaacttccgtgaaggtctgaacgtactgcagtacttcatctccacccacggtgctcgt
aagggtctggcggataccgctctgaagaccgcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggatctggtgatcaccgagtccgactgtggcaccctcgaaggtctg
tggatgaccccgctgattgaaggcggtgacgtggtcgagccgctgcgcgagcgcgtgctg
ggccgtgtcgtctgcgaagacgtcatgatccccggttctgatgaagtgctgctgccccgc
aacaccctgctggacgaagctaaggtcgacctgctggaagcccactccatcgaccaggtg
aaagtgcgttccgtcatcacctgtgacaccgacttcggcgtctgtgcccactgttacggc
cgtgacttggcccgtggccacatcatcaacggcggtgaggccattggtgttatcgccgcc
cagtccatcggtgaacccggcacccagctgaccatgcgtaccttccacatcggtggtgcg
gcctcccgggccaccgcggaaaactccgtacaggtcaagaacagcggctcactgaagctg
cacaacgccaagttcgttgtgaacagcgacggcaagatcgtcatcacctctcgctccacc
gagctgaccgtgaccgacgagaacggccgtgagcgcgagcgttacaagctgccctacggt
gccgtattgaccaagcaggacggtgaagccgttgccgctggcgacatcgttgccaactgg
gatccgcacacccacccgatcatcaccgaggtgaagggtcagattaagttcgtggacatg
ctggatggcgtgaccatgagccgccagaccgacgaactgaccggtctgtccagcatcgtt
atccttgagccctctcagcgtccgaccgcgggcaaagagatgcgtcccatggtgaaactg
gtggacgagaagggtaaggacgtcaacatcgctggcaccgatatcccggcccagtacttc
ctgcccggtaacgccatcgtcaacctggacgacggtgtcatggtgaacgtgggtgacgcc
ctggcgcgtatcccgcaggaaacctccaagacccgcgacatcactggtggtctgccccgc
gttgccgacctgttcgaagcccgccgtccgaaagagccggcaatcctggccgagatcagc
ggtaccatctctttcggcaaggagaccaaaggcaagcgtcgtctggtgatcacaccttcc
gaaggcaacgcctacgaagagatgatcccgaaatggcgtcagctgaacgtcttcgaaggt
gaacaggtccagcgcggtgaagtcatcgccgacggtccggaagcacctcaggacatactg
cgcctgcgtggcatcgaggctgtggcccgttacatcgttaacgaagtgcaggacgtttac
cgtctgcagggcgttaagatcaacgacaagcacatcgaaaccatcgttcgccagatgctg
cgtaagtgcaccatcaccaacccgggtgactccgagctcctggaaggcgaaacagtggaa
gtggcgcgcgtcaagatcgccaaccgcgacctggaaaacgccggcaagcagcctgcctcc
ttcgagcgccagctgctgggtatcaccaaggcgtccctggcaaccgagtctttcatatcg
gcagcctccttccaggaaaccacccgcgtcctgaccgaagcggcggtttccggcaaggcc
gacgacctgcgcggcctgaaagaaaacgtcatcgttggccgtctgatcccggccggtacc
ggttactcctatcaccaggaacgtaaccgtcagcgcgccaaaggcgtggctgtagccgag
ccgcagatgactgccgatgacgcagagaaagcgctgaccgatctgttgaacgccgatctg
ggcagcgaagagtaa
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