Gallaecimonas kandeliae: PVT67_02960
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Entry
PVT67_02960 CDS
T09225
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PVT67_02960 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_02960 (recB)
Enzymes [BR:
gkn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PVT67_02960 (recB)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PVT67_02960 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
WKE66223
LinkDB
All DBs
Position
complement(618052..621675)
Genome browser
AA seq
1207 aa
AA seq
DB search
MKFQQLDPLAFPLHGSRLIEASAGTGKTYTIAALYLRLVLGSPDGQEAPLTPPQILVVTF
TEAATQELKDRIRARLTEAGAVFAGAGTDDALLQSLKAGFAEPHWPGCAHRLALAAQWMD
EAAIHTIHGWCNRMLRAHAFASGSLFDLRLETDLSALLDQAVKDYWRRHYYPLPSRQLLG
VLDHWPGPEALKAKIKPWLELAEPQSGDLGQLLAEQQAQRLAALAPLKAQWRQWLPELAE
LLTQALDAKVLSGTYVKRPTLEKFLNGLGDWLADEPQLAPELPDSAWSRFTPEGLAGAVA
KGKAPPQHPAFAALAQLPAQLAALPQDRELLIRHAATWIQQRLEQEKHQSATLGFDDLLG
RLKAALDGDQGPTLAQVIRGEYPVALIDEFQDTDPTQYGIFAKVYGLGQEQPEPAANAVS
ASAAGRTGVFLIGDPKQAIYAFRGADIYTYLQAKQDTAGRHYTLGKNYRSTKELVAAVNG
LFLQGEQQPEGAFLFKDAIPFIEVEANGRKEVLRIDGQPQAPLTCWQLQSDKPVSTGGYR
AALAEACASEMVRLLNLGQQGKAGFEKDGQLEALRPEHMAVLVRAKAEADAIRAALARRG
VQSVYLSDKESVYASAEAADLLAWLRASAEPENHRLLRAALASPSLSLGWAELDRLNHDE
LALEAEVERLKGYQQLWRRQGPLPLVRAWLKDFRLPARLLAGVNGERALTNLLHLAELLQ
QAATGLDGEQALIRHLEGHLGGNGGEEQILRLESDADLVKVVTIHKSKGLEYPLVFLPFI
CSFRPEEGKGEYVSYHQDGKRRLDPDKQPSSIEKADRERLAEDLRLLYVALTRPRHACWL
GLAAIKKGNARDSNLHRSAIGQLLGGGEPLSAEALTGRLQAWQAAIPGLEVLPLPEATDD
SYRPAGQEEPLGQARHFKGPVAEAWWISSYSALKLAEGERIAADTAQGDQLQEDREEPQS
RPSARAGAGMHHFPRGPEPGTFLHGLLEWAAGQGFKPDPAELAELLARRCNLRGWGDWAP
RLGLWLQELLAAPLTLPVGEPVALSALDGHQAEMEFWFDAHQVPLGALDHLVAGAVLPGR
PRPALTPGLLNGMLKGFIDLVFEHQGRFYLADYKSNWLGENDGAYSREAMEQVVLEKRYD
LQYLLYCLALHRLLKARLGQGYDHERHFGGALYLFLRGQGCFTDRPSRALLERLDALFAK
EAGDAAR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattccagcagctcgaccccctggcttttcccctgcacggcagccgcctcatcgag
gccagcgccggcaccggcaagacctacaccatagccgccctctacctgcggctggtgctg
ggctcccccgacggccaggaggcgcccctgacaccgccgcagatcctggtggtgaccttc
accgaggccgccacccaggagctcaaggatcgcatccgcgcccgcctcactgaggcgggc
gccgtcttcgccggcgccggcaccgacgacgccctgctgcagagcctcaaggccggcttt
gccgagccgcactggccgggctgcgcccatcgcctggccctggccgcccagtggatggac
gaggccgccatccacaccatccacggctggtgcaaccgcatgctgagggcccacgccttc
gccagcggcagcctcttcgacctccgcctggaaacggatctctcggcgctgctggatcag
gccgtcaaggactattggcgccgccattactatccgttgccctcccggcagctgctgggg
gtgttggaccattggcccggccccgaggccctcaaggccaagatcaagccctggctggag
ctggccgagccccaaagcggcgacctgggccagttgctggccgagcagcaggcccagcgc
ctggcggccctggcgccgctcaaggcccagtggcgccagtggctgccggagctggccgaa
ctgctgacccaggccctggacgccaaggtgctctccggcacctatgtcaaaaggcccacc
ctggagaagttcctgaacggcctcggcgactggctggccgacgagccgcagctggcgccg
gagctccccgacagcgcctggagccgcttcaccccagagggcctggccggcgccgtcgcc
aagggcaaggccccgccccagcacccggccttcgccgccctggcccagttgcccgcccaa
ctggcggccctgccccaggacagggagctgctgatccgccacgccgccacttggatacag
cagcgcctggagcaggagaagcaccagagcgccaccctcggcttcgacgacctgctgggc
cgcctcaaggccgccctcgacggcgaccagggcccaacactggcccaggtgatccgcggc
gaatacccggtggcgctgatcgacgaattccaggacacggaccccacccagtacggcatc
ttcgccaaggtctacggcctgggccaggagcaacctgagccggcggccaacgccgtatcg
gcgagcgcagcaggcagaactggggtctttttgatcggcgaccccaaacaggccatctac
gccttccgcggcgccgacatctacacctatctgcaggccaagcaggacaccgccggccgc
cactacaccctcggcaagaactaccgctccacaaaggagctggtggccgccgtcaacggc
ctcttcctgcaaggggagcagcagccggagggcgccttcctgttcaaggacgccatcccc
tttatcgaggtggaggccaacggccgcaaagaggtcctgcgcatcgacggccagccccag
gcgccgctcacctgctggcagctgcagagcgacaagccggtttcgaccggcggctacagg
gccgccctggccgaggcctgcgccagcgagatggtgcggctgctgaacctcggccagcaa
ggcaaggccggcttcgagaaggacggccagctggaagcactgcggccggaacacatggcg
gtgctggtgcgcgccaaggccgaggccgacgccatccgcgccgccctcgccaggcgcggc
gtccagtctgtctacctctccgacaaggaatctgtctacgccagcgccgaggcggccgat
ctgctggcctggctgagggccagcgccgagccggaaaaccaccggctgctgcgggccgcc
ctggccagccccagcctgagcctgggctgggctgagctggacaggctcaaccatgacgag
ctggccctggaagcggaagtggagcggctcaagggctaccagcagctgtggcgccgccag
gggcctttgcccctggtcagggcctggctcaaggacttccggctgccggcccggctgctg
gccggggtcaacggtgagcgggcgctgaccaacctgctgcacctggccgagctgctgcag
caggccgccaccggcctggacggcgagcaggcgctgatccgccacctggaagggcacctg
ggcggcaacggcggcgaggagcagatactgcgcctcgaatccgacgccgacctggtcaag
gtggtcaccatccacaagtccaagggcctggaataccccctggtgttcctgcccttcatc
tgcagcttccgccccgaagagggcaagggcgagtacgtcagctaccaccaagacggcaag
cgccgcctggaccccgacaagcagcccagcagcatcgagaaggcggacagggaacggctg
gccgaggatctgcgcctgctctacgtggccctgacccggccccgccacgcctgctggctg
ggcctggccgccatcaagaagggcaacgccagggacagcaacctgcaccgcagcgccata
ggccagctccttggcggcggcgagcccctgagtgccgaggccctgaccgggcgcctgcag
gcctggcaggccgccatccccggcctcgaggtactgccgttgccagaggccacggacgac
agctaccgcccggccggccaggaagagcccctgggccaggcccgccatttcaagggccct
gtggccgaggcctggtggatctcctcctactcggccctcaagctggcggagggggagcgc
atcgccgccgacacggcccagggcgaccagctgcaggaggacagggaagagccccagagc
cgccccagcgccagggccggcgccggcatgcaccacttcccccgcggacccgagcccggc
accttcctgcacggcctgctggagtgggccgccggccagggcttcaagccggacccagct
gagctggccgagctgctggcccgccgctgcaacctgcgtggctggggcgactgggccccc
aggctgggcctgtggctgcaggaactgctggccgcccccctgaccctgccggtgggcgag
cctgtggcgctcagcgccctggacggccaccaggcggagatggagttctggttcgacgcc
caccaggtgccccttggcgcgctggaccacctggtcgccggcgccgtgctgcccggccgg
cctcggccggccctgacccctgggctgctcaacggcatgctcaagggctttatcgacctg
gtgttcgagcaccagggccgcttctacctggccgactacaagtccaactggctgggggag
aacgacggcgcctacagccgcgaggccatggagcaggtggtgctggaaaagcgctacgac
ctccagtacctgctctactgcctggccctgcaccggctgctgaaggcccgcctgggccaa
ggctatgaccacgagcgccacttcggcggcgccctctacctcttcctgcgcggccaaggc
tgcttcaccgacaggccctccagggcactgctggagcgcctggacgccctcttcgccaag
gaggccggcgatgccgctcgataa
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