Gallaecimonas kandeliae: PVT67_03730
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Entry
PVT67_03730 CDS
T09225
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
gkn
Gallaecimonas kandeliae
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gkn03009
]
PVT67_03730 (srmB)
Enzymes [BR:
gkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVT67_03730 (srmB)
Ribosome biogenesis [BR:
gkn03009
]
Prokaryotic type
rRNA helicases
PVT67_03730 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Bcr-Abl_Oligo
CoA_binding_2
RMI2
Abhydrolase_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WKE66371
LinkDB
All DBs
Position
complement(788419..789759)
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AA seq
446 aa
AA seq
DB search
MAFSKLELDPALLAAVNELGYTKPTAIQSQAIPAAMDGHDLLAMSPTGTGKTAAFLLPAL
QHLLDYPKKRKEPPRVLILTPTRELALQIEADAKALAGKTPVGIGSITGGVDYKVHGKAL
GGEVDLVVATPGRLVEYIERELFDCIAVEILVLDEADRMLEMGFQKDMELILEKCEQRRQ
TLLFSATLEGHNLEQFAEKALTDPVELSADPSRRERKKIHQWAYFCDDKPHKVKLLLAHL
RHPETEKALVFVRTREKLAELRDQLASEKINCVWLQGEMAQDKRNNAVARFKDGRAKVLI
ATDVAARGLHIDDISHVINFDMPRTADIYVHRIGRTGRAGAKGTAINLVEAHDLPLLRRI
ERYQGEPIKVRVVDELRPKSKFKEPVKKKKDKDKKKPSAKKAQAQKKAKDDAKAKKQADR
KKLRHRDTKNKGAPRRKPREEGAATE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagcaaactggaactggacccggccctgttggctgcggtgaacgaactaggc
tacaccaagcccaccgccatacagagccaggccataccggcggccatggacggtcacgac
ctgctggccatgagccccaccggcaccggcaagaccgccgccttcctgctgccggccctg
cagcacctgctggactaccccaagaagcgcaaagagccacccagggtgctgatcctcacc
cccacccgtgagctggccctgcagatagaggcggacgccaaggccctggccggcaagacc
ccggtcggcatcggctccatcaccggcggcgtggactacaaggtgcacggcaaggccctg
gggggcgaggtggatctggtggtggccaccccgggccgcctggtggagtacatagagcgg
gagctgttcgactgcatcgccgtcgagatcctggtgctggacgaagccgaccgcatgctg
gagatgggcttccagaaggacatggagctgatcctcgagaaatgcgaacagcgccgccag
accctgctgttctccgccaccctggaaggccacaacctggagcagtttgccgagaaggcg
ctgaccgatccggtcgaactcagtgccgatccgtcccggcgcgagcgcaagaagatccac
cagtgggcctacttctgcgacgacaagccccacaaggtcaagctgctgctggcccacctg
cgccaccccgagaccgagaaggccctggtgttcgtgcgcacccgcgagaagctggccgag
ctgcgcgaccaactggcctcggagaagatcaactgcgtctggctccagggtgagatggcc
caggacaagcgcaacaacgccgtcgcccgcttcaaggacggccgcgccaaggtgctgatc
gccaccgacgtggcggcccgtggcctgcacatcgatgacatcagccacgtcatcaacttc
gacatgccccgcaccgccgacatctatgtgcaccgtatcggccgcaccggccgggccggc
gccaagggcaccgccatcaacctggtggaagcccatgacctgccgctgctgcgccgcatc
gagcgctaccagggcgagccgatcaaggtgcgggtcgtcgacgagctgaggcccaagtcc
aagttcaaggagccggtgaagaagaaaaaggacaaggacaagaagaagcccagcgccaag
aaggcccaggcccagaagaaggccaaggacgacgccaaggccaaaaagcaggccgaccgc
aagaagctgcgccaccgcgataccaagaacaagggcgctccaaggcgcaaaccccgcgaa
gaaggggcggcaacggaataa
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