Gallaecimonas kandeliae: PVT67_06935
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Entry
PVT67_06935 CDS
T09225
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gkn
Gallaecimonas kandeliae
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gkn03032
]
PVT67_06935 (topA)
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_06935 (topA)
Enzymes [BR:
gkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PVT67_06935 (topA)
DNA replication proteins [BR:
gkn03032
]
Prokaryotic type
DNA Topoisomerases
PVT67_06935 (topA)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PVT67_06935 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_TFIIB
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WKE66964
LinkDB
All DBs
Position
1416697..1419246
Genome browser
AA seq
849 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSIGHIRDLPTSGGGGKGKKSSATNALVARMG
IDPDNHWQAHYEVLPGKEKVVAELKSLADKADKVYLATDLDREGEAIAWHLKELIGGDDS
RFQRVVFNEITKKAIQQAFEHPSQVSQEKVNAQQARRFLDRVVGYMVSPLLWKKIARGLS
AGRVQSVAVRLVVEREREIRAFTPEEYWDLHADLQAAEGALRMMVSHQDGQAFKPVTEAQ
TMAAVAALKGAGYQITDREDKPSQSRPSAPFITSTLQQAASTRLSFGVKKTMMLAQRLYE
AGHITYMRTDSTNLSAEAVDAVRGYIQSEFGPAYLPAGPLTYGAKANAQEAHEAIRPSDV
RIKSEDLDVERDAQRLYELIWRQFVACQMTNAVYDVTQLTATAKAQGSDFTLKAKGRVQR
FDGWTRVLNPMKRKEDDEQLPNVAVGETLKLDALDPRQHFTKPPARFTEASLVKELEKRG
IGRPSTYASIISTIQDRGYVKVENRRFYAEKMGEIVNDRLVENFTNLLSYDFTARMEGEL
DDIANGGREWHAVLDEFYGDFKKRLDDAEEGMRSNAMVLTDIDCPTCGRKMGIRTASTGV
FLGCSGYNLPPKERCKTTINLTPGEEVIKVDDEEGETNALLAKKRCPKCGTAMDSYLVDA
GRKLHVCGNNPDCDGYLLETGEFKLKGYDGPLIECDKCGSNMELKNGRFGKYFGCTNADC
KNTRKILRNGEVAPPKEDPVALPELKCEKSDAHFVLRDGAAGIFLAASTFPKSRETRAPL
VSELKRFEDRLPEKFKYLAKAPLKDKDGNPTLVKFSRKTKSQYVGSEKDGKATSWMAFYE
NGKWVDNGK
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcactggtgatagtggagtccccagccaaggccaagaccattaataaatat
cttggcaaggacttcatcgttaaatcttctatcggccatattcgcgacctgcccaccagc
gggggcggcggcaagggtaagaaaagcagcgcgaccaacgccctggtggcgcgcatgggc
atagaccccgacaaccactggcaggcccattacgaggtgctgcccggcaaggaaaaggtg
gttgccgaactcaaatccctggcggacaaggccgacaaggtctatctcgcgacggacttg
gatagggaaggggaggccatcgcctggcacctcaaggagctgatcggcggtgacgacagc
cgcttccagcgggtggtgttcaacgagatcaccaagaaggccatccaacaggccttcgag
caccccagccaggtcagccaggagaaggtgaacgcccagcaggcgcgccgtttcctcgac
cgcgtcgtcggctacatggtgtcgccgctgctgtggaagaagatagcccgtggcctctcg
gccggccgggtgcagtccgtcgccgtgcgcctggtggtggagcgtgagcgggagatccgt
gccttcacgcccgaagaatactgggatctccatgccgacctgcaggccgccgaaggcgcc
ctgcgcatgatggtcagccaccaggacggccaagccttcaagcccgtgaccgaagcccaa
accatggccgccgtcgccgccctcaagggcgccggctaccagatcacggaccgtgaggac
aagcccagccagtccaggccttccgcccccttcatcacctccaccttgcagcaggcggcc
agtacccgcctgagcttcggggtcaagaagaccatgatgctggcccagcgcctctatgaa
gccggccacatcacctacatgcgtaccgactccaccaacctctccgccgaggcggtggac
gcggtgcgtggctacatccagagcgaattcggcccggcctacctgccggccggccccctc
acctacggggccaaggccaacgcccaagaagcccacgaggccattcgcccctcggacgtg
cgcatcaaatccgaggacctggacgtcgagcgcgacgcccagcgcctctacgaactcatc
tggcgccagttcgtggcctgccagatgaccaacgccgtctacgacgtcacccagctcacc
gccaccgccaaggcccagggcagcgacttcaccctcaaggccaagggccgggtgcagcgc
ttcgacggttggacccgggtgctgaaccccatgaagcgcaaggaagacgacgagcagctg
cccaacgtggccgtgggggagaccctcaagctcgacgccctggatcccaggcagcacttc
accaagccgccggcccgtttcaccgaggcgtccctggtcaaggagctggaaaagcgcggc
ataggccggccttccacctacgcctccatcatctccaccatccaggaccgcggttacgtc
aaggtggagaaccgccgcttctacgccgagaagatgggggagatcgtcaacgaccggctg
gtggagaacttcaccaacctgctcagctacgacttcacggcccgcatggaaggggagctg
gacgacatcgccaatggcggccgtgaatggcacgccgtgctcgacgagttctacggtgac
ttcaagaagcgcctggacgacgccgaagagggcatgcgctccaacgccatggtgctgacc
gacatcgactgccctacctgcggccgcaagatgggcattcgtaccgccagcaccggcgtc
ttcctcggctgctccggctacaacctgccgcccaaggaacgttgcaagaccaccatcaac
ctcaccccaggcgaggaagtgatcaaggtcgacgacgaggaaggggaaaccaacgccctg
ctggccaagaagcgctgccccaaatgcggcaccgccatggactcctacctggtggacgcc
ggtcgcaagctccatgtctgcggcaacaaccccgactgcgacggctacctgctggagacc
ggcgagttcaagctcaagggctatgacggccccctgatcgagtgcgacaagtgcggctcg
aacatggagctcaagaacggccgcttcggcaagtacttcggctgcaccaacgcggactgc
aagaacacccgcaagatcctgcgtaacggcgaagtggcgccgcccaaggaagatcccgtg
gccctgccggagctcaaatgcgagaaatccgacgcccacttcgtgctccgcgacggcgcc
gccggcatcttcctggccgccagcaccttccccaaatcccgggaaacgcgggcgccgctg
gtgtctgagctcaaacgcttcgaagacaggctgccggagaagttcaagtacctggccaag
gcgccgctcaaggacaaggacggcaacccgaccctggtcaagttctcccgcaagaccaag
agccagtacgtgggctcagagaaagacggcaaggccaccagttggatggccttctatgag
aacggcaaatgggtggacaacggcaagtaa
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