Gallaecimonas kandeliae: PVT67_09265
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Entry
PVT67_09265 CDS
T09225
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVT67_09265 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gkn03019
]
PVT67_09265 (rne)
03009 Ribosome biogenesis [BR:
gkn03009
]
PVT67_09265 (rne)
Enzymes [BR:
gkn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PVT67_09265 (rne)
Messenger RNA biogenesis [BR:
gkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVT67_09265 (rne)
Ribosome biogenesis [BR:
gkn03009
]
Prokaryotic type
rRNA processing factors
PVT67_09265 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WKE67399
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All DBs
Position
1902289..1905264
Genome browser
AA seq
991 aa
AA seq
DB search
MKRMLINATQAEELRVALVDGQKLYDLDIEHPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARSYFVEGAKVSGRPNIKDVLKEGQEVIVQIDKEERGNKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSHLEPPEGMGLIVRTAGVGKSAEEL
KWDLDVLLHHWNNIQEAAASRPAPFLIHQESNVIVRAIRDYLRRDVGEIVIDHARVFEEV
KNHIQTMRPDFLSRVKHYKGEIPLFNYYQIESQIESAFQREVRLPSGGSIVIDSTEALTA
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPARHQREVEN
RLADAVRADRARVQLGRISRFGLMEMSRQRLRPSLGDSSNHVCPRCTGTGYIRSTESLAL
SILRLIEEESLKDNTAQVEAQVPVSVAAYLLNEKRGAIRFIEQRHDVRVFIVPNQYLETP
HFEVLRHREDEELEEPSYDMTKGQDKRAPVYVPPVAAKHQKADEPALKGLQAPAAPAPSA
APAAKAPAKKAPVAEQPGLVSRLLKALGSLFSSAEKEEAKPQPKDNKRQQNRKGVDARRQ
QKGRGRGRDEQRQGRDDKRAQDGEQRRERQQGRGRDEQRQGREEQRGRDEQRQGREEQRG
RDDRTRDNRARDEKAAEQRESRREEERNKRRQRDDEQQSAKRQQRSREDQTDKVEETEDQ
VEEKVPQQRRERRQLTQSVRMDGELKPQPPKAEQPKVEPVEEPQAELEAVETVTEALVEE
REERNDDRQRRRGPRHLRGHRRPRPERQNGEQEEALVAEPVEAMAPVAEEAAVAVTAEAP
EAEPAVVETTAAPEAAEVVAEAPQAEIEAQVEAVEEAAPVLVESKAEAEEAVVEAETAAT
TAAEVVAEPEVEAPVEPIAKAKPAKKEKAAQPKKAKTQGRAQAPMARPAEVALPPVVRNP
QPFERKAVAHSGRAGGLGQPASRVSSPMTKV
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaactcaggccgaagagttgcgggtggctttggtggat
ggtcaaaaactttatgacctggacatcgagcaccccggccacgaacagaaaaaagccaac
atctataaaggcaagatcacccgcgtagaacccagcctggaagccgccttcgtcgactat
ggcgccgagcgtcacggcttccttcccctcaaggaaatcgcccgcagttactttgtcgaa
ggcgccaaggtctcaggccgtcccaacatcaaggacgtgctcaaggaaggccaggaagtc
atagtgcagatcgacaaggaagagcgtggcaacaagggcgcggccctgaccaccttcctg
agcctggctggttcctacctggtgctgatgcccaacaacccccgcgccggcggtatttcc
cgccgcatcgagggtgatgagcgcaccgagctcaaagaagccctttcccatcttgagccg
ccggaaggcatgggccttatcgtccgtaccgccggcgtcggcaagtctgccgaagagctg
aagtgggacctggacgtgctgctgcaccactggaacaacatccaggaagcggcggccagc
cgccctgcccctttcctgatccaccaggaatccaacgtcatagtgcgggccatccgcgac
tacctgcgccgtgatgttggcgagatcgtcatcgaccacgcccgggtcttcgaagaggtc
aagaaccacatccagaccatgcgtcccgacttcctgagccgggtcaagcactacaagggt
gagatccccctcttcaactactaccagatcgagtcccagatcgagtcggccttccagcgc
gaagtgcgcctgccctccggtggttccatcgtcatcgactccaccgaggccctgaccgcc
atcgacatcaactccgcccgcgctaccaagggtggtgacatcgaggagacggccctcaac
accaacctcgaagcggccgacgaaatcgcccgccagctgcgcctgcgcgacttgggcggc
ctggtggtcatcgacttcatcgacatgaccccggcccgtcaccagcgggaagtggaaaac
cgcctggcggacgccgtgcgcgccgaccgcgcccgggtacagctcggccgcatcagccgc
ttcggcctgatggagatgtcccgccagcgcctgcgcccctccctgggtgactcctccaac
catgtctgcccccgctgtaccggcacaggttacatccgctccaccgagtccttggccctg
tccatactgcgcctcatcgaggaagagtccctcaaggacaacaccgcccaggtcgaggcc
caggtaccggtttccgttgccgcctacctgctcaacgagaagcgcggcgccatccgcttc
atcgagcagcgccatgacgtgcgcgtcttcatagttcccaaccagtacctggagacccca
cacttcgaagtgctccgtcaccgcgaagacgaggagctggaagagccctcctacgacatg
accaagggccaggacaagcgtgcgcctgtctatgttccccctgtcgccgccaagcaccag
aaggctgacgagcctgccctcaaaggcctgcaggcccctgccgcgccggcccccagtgct
gcccctgcagccaaggcgcctgccaagaaggctcctgttgcagaacagcctggcctggtc
agccgtctgctgaaggccctgggcagcctcttctcctccgccgagaaagaagaagccaag
ccgcagccgaaggacaacaagcgccagcagaaccgcaaaggcgtggatgcccgccgccag
cagaaaggccgtggccgtggccgcgacgagcaacgccaaggccgtgacgacaagcgcgcc
caggacggcgaacagcgccgcgagcgccaacagggccgtggccgtgacgaacagcgtcaa
ggtcgcgaagagcagcgcggtcgtgacgaacagcgccagggccgtgaagaacagcgtggt
cgtgacgatcgcaccagggacaaccgtgcccgcgacgaaaaggccgccgagcagcgcgaa
agccgccgcgaggaagagcgcaacaagcgccgccagcgcgacgacgagcagcagagcgcc
aagcgccagcagcgtagccgcgaagaccaaaccgacaaggtcgaggaaaccgaagaccag
gtcgaggagaaggtgccgcagcagcgccgtgagcgccgccagctgacccagtccgtgcgt
atggacggtgagctcaagccccagccgcccaaggccgaacagcccaaggtcgagccggtg
gaagagcctcaggctgaactggaagccgtggaaaccgtcaccgaggccctggtcgaggaa
cgcgaagagcgcaatgacgaccgtcagcgtcgccgtggtccccgccacctgcgtggccat
cgccgcccccgtcccgagcgtcaaaatggcgagcaggaagaggcccttgttgccgagccg
gttgaagccatggctcctgtcgccgaagaggccgctgtagctgtgacagccgaggcccca
gaagctgagcctgccgtggttgaaaccacagccgcacctgaagcggccgaagtggttgcc
gaagcgccccaagccgagatagaagcccaggtcgaggccgtcgaagaagccgcacctgtc
ctggtcgaaagcaaggccgaggctgaggaggctgttgttgaggccgaaacagccgcaact
actgctgctgaagtggttgcagaacccgaggtcgaagcgcctgtggagccgatagccaag
gccaagcctgccaagaaggaaaaagccgcccagcccaagaaggccaaaacccagggccgt
gcccaggcgcccatggcccgtccggccgaggtcgcactgccgcccgtggtgcgtaatcct
cagcctttcgagcgcaaagccgttgcccacagtggccgagccggtggccttggccaacct
gccagccgggtttccagccccatgaccaaggtctga
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