Gallaecimonas kandeliae: PVT67_09465
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Entry
PVT67_09465 CDS
T09225
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PVT67_09465 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_09465 (sbcB)
Enzymes [BR:
gkn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PVT67_09465 (sbcB)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PVT67_09465 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PVT67_09465 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PVT67_09465 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
MIOS_WD40
MAR_sialic_bdg
Motif
Other DBs
NCBI-ProteinID:
WKE63928
LinkDB
All DBs
Position
1944095..1945510
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AA seq
471 aa
AA seq
DB search
MTASLLFHDFETFGADPKRDRPCQFAAIRTDEDLNPIAEPLTWYSQPTDDYLPHPLACLI
TGITPQQALAKGLPEPEFIRRIHAEMSQPQTCSLGYNSLRFDDEVTRFTLYRNFFDPYER
EWQNGNSRWDLIDLVRATYALRPEGIHWPENEDGSPSFKLELLSAANELAHQRAHDALSD
VEATIGLAKLIRERQPKLYDYFFKLRRKQAVAQLIDVINLQPLVHTSSRFPALQGCTTYV
VPLAWHPVNKNAVIVVDLNGDLAPLLELEGEALKARLYTRNADLEAGQSRLPVKLVHINK
CPILAPAKTLGPERADELGIDRGRCRDNLEQLKQRPQLRDKLVELFAAEGEFASQDAEEA
LYGGFISDADKAAMALVRDNQDPNQLGQIRFKDERLNTLLFRYRARHFAQTLTEQEQQRW
RCYRQEVLVEGSRGFSLQDFMLELESLAEERAQDEKAMAILKSLYQYAQSL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccagccttttattccatgattttgaaacctttggcgccgatcccaagagggac
aggccttgccagttcgcggccatccgtaccgacgaagatctcaaccccatagcagagccg
ctcacctggtacagccagcccacggacgactacctgcctcatcccttggcctgtcttatc
accggcatcaccccacagcaggccctggccaagggcctgccggagccggagttcatccgc
cgcatccatgccgagatgagccagccccagacctgcagcctgggttacaacagcctgcgc
ttcgacgacgaagtgacccgcttcaccctctatcgcaacttcttcgacccctacgagcgg
gaatggcagaacggcaacagccgctgggatcttatcgatctggtcagggccacctatgcc
ctgaggccagaaggcatccactggcctgaaaacgaggacggcagccccagcttcaaactg
gagctgctgagcgccgccaacgagctggcccaccagcgcgcccacgacgccctctctgac
gtcgaggccaccataggcctggccaaactgatccgcgagcgccagcccaagctctacgac
tatttcttcaagctgcgccgcaagcaggccgtggcccagctcatcgacgtcatcaacctc
caacctctggtgcacacctccagccgtttccccgccctccagggctgcaccacctacgtg
gtgcccttggcctggcacccggtcaacaagaacgccgtcatcgtcgtcgacctcaacggc
gacctcgcgcccctgctggagctggaaggcgaggccctcaaggcgaggctctacacccgc
aacgccgacttggaagccggccagtcgcggctgccggtcaagctggtgcacatcaacaag
tgccccatactggcccccgccaagactctgggccctgagcgggctgacgagctcggcata
gaccgcggccgctgccgcgacaacctggagcagctgaagcagcggccacaactgcgcgac
aagctggtcgagctctttgcagctgaaggggagttcgccagccaggatgccgaggaagcc
ctctatggcggctttatcagcgatgccgacaaagccgccatggccctggtccgcgacaat
caggatccgaaccagcttggccagatccggttcaaggatgagcggctcaacaccttgctg
ttccgttaccgggcccgccacttcgcccagaccctgaccgagcaagaacagcagcgctgg
cgctgctaccgccaggaagtgctggtggagggcagccgcggcttcagcttgcaggacttc
atgctggagctggagagcctggccgaagagcgggcccaagacgaaaaggccatggccatc
ctcaagagcctctaccagtacgcccaaagcctctaa
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