Gallaecimonas kandeliae: PVT67_12350
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Entry
PVT67_12350 CDS
T09225
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PVT67_12350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gkn03000
]
PVT67_12350
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_12350
Enzymes [BR:
gkn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PVT67_12350
Transcription factors [BR:
gkn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PVT67_12350
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PVT67_12350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_11
HHH
Motif
Other DBs
NCBI-ProteinID:
WKE64464
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All DBs
Position
2485189..2486595
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AA seq
468 aa
AA seq
DB search
MKLDDAACYQALVSRDARFDGRFFAGVLSTGIYCRPVCPARKPLADNCRFFSNAAAAEAA
GFRPCMKCRPERAPGLAWSDGKERLAQKAEQLIKSGDFTSLEALAERLGVTDRHLRRTFH
ETFGISPVAYAQTQRLLLAKKLLSSTQLPVTQVAMASGFGSLRRMNSLFAERYGLSPSRL
RAQAPKGEARFHLGFRPPFAWHDMLAFLAGRAIEGVELIGGESYSRTVRLSYQGQWHKGW
LKMQKHAERPELIVTLSDSLLMAVPPVLAGLRHLFDLDADPTEIKGALGGLAAANPGLRV
PGAFDGLEMAVRAILGQQVTVAAARTLAGRLAAQGEPCQDAPAGLSHYFPDAEALLALGQ
DKLGELGVIRSRGKAICALAAAMIEGLELGPAAEPEPTIKALEALPGIGPWTASYIAMRA
LHWPDAWPYGDHGLKVATGLADPKALAGAMAPYSPWRAYATLHLWSTL
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgacgatgccgcctgctaccaggcccttgtcagccgcgatgcccgcttcgac
ggccgcttctttgccggcgtcctaagcaccggcatctactgccgccccgtctgccctgcc
cgcaagccccttgccgacaactgccgtttcttctccaacgccgccgccgccgaggccgca
ggctttcggccctgcatgaaatgccggcccgaacgggcccccggccttgcgtggagcgac
ggcaaagaacgccttgcccaaaaagccgaacagctcatcaagagcggcgattttacgagt
ctcgaggcgctggccgaacggctcggcgtcaccgacaggcacctgcgcaggacctttcac
gagaccttcggcatcagccccgtcgcctacgcccagacccagcggctgctgctcgccaag
aaactgctctccagtacccagctgcccgtgacccaggtcgccatggcgtccggtttcggc
tcccttcggcgcatgaacagcctctttgccgaacgttatggcctcagcccaagccgactg
cgggcccaggccccgaaaggcgaagcccgctttcacctcggttttaggccgccttttgcc
tggcacgacatgctggctttcctggccggccgcgccatcgaaggggtggagcttatcggg
ggcgagagctacagccgcacagtgcggcttagctaccagggccaatggcacaagggctgg
ctcaagatgcaaaagcacgccgagcgccccgagctgatcgtgacgctttcggactcgctg
ctgatggccgtacctcccgtgctggccggcctgcgccacctctttgacctggatgccgat
ccgaccgagatcaaaggggctctcggcgggctggcagcagccaaccccggcctgcgggtc
cccggcgccttcgacggcctggagatggccgtcagggccatcctcggccaacaggtgact
gtcgcggcagcccgcaccttggctggccggctcgccgcccaaggcgagccttgccaggat
gccccggccgggctcagccactactttcccgacgccgaggcattgctggccctcggccag
gacaaactgggggaactgggggtgatccgcagccgcggcaaggccatctgcgccttggcg
gcggccatgattgagggcctggaacttggcccggcggcagagccagagcccaccatcaag
gcactggaagcgctgcccggcattggcccctggacggccagctatatcgccatgcgggcg
ctgcactggcccgacgcctggccctatggcgaccacggcctcaaggtggcgacaggcctt
gccgatcccaaggccctggcaggcgccatggccccttacagcccttggcgggcctatgcc
accttgcatctatggagcaccttatga
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