Gallaecimonas kandeliae: PVT67_16440
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Entry
PVT67_16440 CDS
T09225
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVT67_16440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gkn03019
]
PVT67_16440
03009 Ribosome biogenesis [BR:
gkn03009
]
PVT67_16440
Enzymes [BR:
gkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVT67_16440
Messenger RNA biogenesis [BR:
gkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVT67_16440
Ribosome biogenesis [BR:
gkn03009
]
Prokaryotic type
rRNA helicases
PVT67_16440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
WKE65231
LinkDB
All DBs
Position
complement(3325611..3327335)
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AA seq
574 aa
AA seq
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MQALDDLGFQTPSPIQASCIPLLLEGRDVLGIAQTGTGKTAAFGLPLLANVDTSLGLPQL
LLLAPTRELAQQVAAALIDFGRYMPGLKVVTLYGGAPFGPQKMDLRRGAQVVVATPGRMI
DHLDRGSLTLDSIKAVVLDEADEMLRMGFIEDVERILSETPAERQTALFSATLPPMIRNL
VNKFMGDYQEVKVSAPAQTVDRITQKGLMVFEEHKPAVLTRVLEAEDFDAAIIFARTKDA
TTTLAEHLNQNGFKATAMNGDLGQREREAAVEALKDGRLDIVVATDVAARGLDVERIGLV
VNYDIPREPDAYVHRIGRTGRAGRTGTAVLLYTPRERMLLSRIEKVTRQKVDVITLPDRD
AVFERRVGKLKDNLAAAEREDRLALVARLGEELELSPAELAAALLAQLEQFQPLAVGADP
KMPSERGPRDDRPRREFDRNDRRERFGDRERSGERRFERKGERFGERSGERRFERNDRAG
ADRAGDDKPRRERPSMDMVAYRLEVGRSHGATPRHIVGAIANEAKISSKYIGQIKIHDEH
SVVMLPTGMPKDIESQFQRVYICSRPMKLRQLDA
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccctggatgatctgggtttccaaactccctcacccattcaggccagttgcatc
ccgctgcttttggaaggtcgcgacgtactcggtatagcccagaccggcaccggcaagaca
gccgccttcggcctgccgctgctggccaacgtcgacaccagcctgggcctgccccagctg
ctgctgctggcccccacccgtgagctggcccagcaggttgccgccgccctcatcgacttc
ggccgttacatgcccggcctgaaagtggtgaccctctacggtggcgcccccttcggtccc
cagaagatggacctgcgccgcggcgcccaggtcgtggtggccacccccggccgcatgatc
gaccacctggatcgtggctccctgaccctggactccatcaaagccgtggtgctggacgaa
gcggacgagatgctgcgcatgggcttcatcgaagacgtggagcgcatcctcagcgaaacc
ccggccgagcgccagacagccctcttctccgccaccctgccgccgatgatccgcaacctc
gtcaacaagttcatgggcgactaccaggaagtcaaagtctcggccccggcccagaccgtt
gaccgcatcacccagaaaggcctgatggtgttcgaagaacacaagccggccgtgctgacc
cgtgtcctggaagcggaagacttcgacgccgccatcatcttcgcccgtaccaaggacgcc
accaccaccctggctgagcacctcaaccagaacggcttcaaggccaccgccatgaacggt
gacctgggccagcgtgagcgtgaagccgccgtcgaggccctcaaagacggccgcctggac
atagtggtagccacagacgtggccgcccgcggcctggacgtggagcgtatcggcctggtg
gtgaactacgacatcccccgtgagcccgacgcctacgtacaccgtatcggccgtaccggc
cgcgccggccgcaccggcaccgccgtgctgctctacaccccccgcgagcgcatgctgctg
agccgcatcgagaaggtgacccgccagaaggtggacgtcatcaccctgccggaccgtgac
gccgtcttcgaacgccgcgtcggcaagctcaaggacaacctggccgccgccgagcgcgaa
gaccgcctggccctggtcgcccgcctgggcgaagagctggaactgagcccggccgaactg
gccgccgccctgctggcccagctggagcagttccagcccctggccgtgggcgccgatccc
aagatgcccagcgagcgtggcccccgtgacgaccgcccccgccgcgagttcgaccgcaac
gaccgccgtgagcgcttcggcgaccgcgagcgttccggcgagcgccgtttcgagcgcaag
ggtgagcgcttcggtgaacgctccggcgagcgccgtttcgagcgtaatgaccgtgccggc
gccgaccgtgccggtgacgacaagccgcgccgcgagcgtcccagcatggacatggtggcc
taccgcctggaagtgggtcgcagccacggcgccactccgcgccacatcgtcggcgccatc
gccaacgaggccaagatcagctccaagtacattggccagatcaagatccacgacgagcac
agcgtggtgatgctgcccaccggcatgcccaaggacatcgagagccagttccagcgggtc
tacatctgctccaggcccatgaagctgcgccagctggatgcctga
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