Giardia lamblia: GL50803_0013452
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Entry
GL50803_0013452 CDS
T01047
Name
(RefSeq) Regulator of nonsense transcripts 1-like protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gla
Giardia lamblia
Pathway
gla03013
Nucleocytoplasmic transport
gla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GL50803_0013452
03015 mRNA surveillance pathway
GL50803_0013452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gla03019
]
GL50803_0013452
Enzymes [BR:
gla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GL50803_0013452
5.6.2.5 RNA 5'-3' helicase
GL50803_0013452
Messenger RNA biogenesis [BR:
gla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
GL50803_0013452
mRNA cycle factors
Common to processing body (P body) and stress granule
GL50803_0013452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
AAA_30
AAA_19
Viral_helicase1
AAA_23
PhoH
DUF7877
Motif
Other DBs
NCBI-GeneID:
5700179
NCBI-ProteinID:
XP_001707280
UniProt:
E2RTN1
Q0GK31
LinkDB
All DBs
Position
4:<129463..>133377
Genome browser
AA seq
1304 aa
AA seq
DB search
MEPCALCGSLAEPLVRCGACREVYCNNFDHKTSHIVRHLQLTGHDHIEPVSEFYIPSDVL
YCNDCETKGITSLGFLPTKADACSGIICCVNCRMYHDQTHDTSAWRPIISTHIDSRFFPG
HEEAENQGDEPNVGDCTFTGVESYYTPLPSTEMTSKDSIVPSVHDILNDDLLFTMDTYRS
NLFSSLSPMEAQPHERQTFLEMIEDRAASKVNDHLKLVDEDVPVVTDTALERLTKQSDAT
RNRRRIIKKSCIDDETARQEILASIVLAIPYNMEPQTLEAVTARGCPAMVMWAIIDGLLP
GFDFAIPRDKSTHVRTFVSKTDRCHILSHFYCRRKLHYFHYMLPILALERLITRDQLEKN
QVPVKGVQFRCLRGRWSVNNFDKSGLATICGAMWEVLIPIQDISMDIKIYKGENFILRII
DYQGENPKGFTLYNGILEIPLLCTSVNGDNVAFFVHQNSELQTSMPYNCVNYELMVKEDV
VEPLTSEMAIDLKFTDIASPASYKHSHFISKPNLQYEIVKCDNDATYKRHVSAIARLCAY
NPSVWSYLTSKKWTRVLNLSSEDFVDSSSERVRLTSFDCFIRFILLADYRMAHAFMDLYK
QGVVTRYGEVLDGIKTRTTDRKAVKDVIPQDKYSANSDPLIVHKFFNLEEQFKQLNMDVT
AELDRNEQMLIESRGNSRSTKGLQSSSGSSSFCREGIDAFQILSFAATNQKKKLSTLPWN
TPYKAMEEDNLDPGLIEKYANNFAHLTKGVKVRSSEDFDINEVLKRASCLMPKTLRSKAD
TERLISELSAFLDTLEEKVTLNFSQKDVIQYVLSRPITLVQGPPGCGKTFIGACLAWLFS
KVYGSLDHDSGSFRQATPVPVLICCPSNTAAESLTLALEPFGLPVVRVVSLARQRLAEYE
ESPNTYADRVCLHVLFEEILKLTLGDDAPSDFTPSKEARLIYENMLDEIPVKQFNEVYNY
LQMKKKENIDVALKQSAEEEISKAMFEIENIIISSAKVVVCTCSTSYDNHLSRVHFSSLI
VDESTQAIEPDTLCAIGHGCSHIVLMGDHKQLGPIVATNIARHSKLDLSLYERLQRAGIE
PHSLTVQYRMHPALSAFPSNTFYNGMLQNGVTQADRQLIPKPLSIDSFPWPIPSTPSFFW
HVQGTHEIGHGTSLRNDTEILCVEAIVDQLLKCYELKQSDIGIVTPYDYQKCQIEMQLKD
AGYSEVFVNSVDAFQGHEKEVIIFSTVRSVDKHIGFLKDQRRLNVGLTRCRCALIIVGNA
TALAIDSTWRSLIQHYYNNKVLVMGRDLDQLFQIESLDEVIPKA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggagccttgtgcattgtgcggctcgttggcagaacccctcgtaagatgtggggcatgc
agagaggtctattgcaacaactttgaccacaaaacgagccatatagtacggcatttgcag
ctcacaggtcacgatcacatagagcctgtctccgaattctatatcccctcagatgtactc
tattgtaacgactgtgagaccaagggaataaccagtttgggcttccttccgacaaaagcc
gacgcatgctccgggataatatgctgtgtgaactgccggatgtaccacgaccagacccat
gatacctccgcgtggcgtcccataatttccacacacatagattcccgcttctttcctgga
cacgaggaggccgaaaaccaaggtgatgagcctaatgttggagattgcaccttcacgggc
gttgaaagttattacactcccctgcctagcacagagatgacgtcgaaggatagcatcgtt
ccctctgtgcatgacattttgaacgacgatctcctgtttacaatggacacttacaggtca
aatctcttttcatcactctctcctatggaagcccaaccgcacgagcgtcagacattttta
gaaatgatagaggatagagcggcaagcaaagttaacgaccatttgaagctagttgatgag
gatgtacccgtcgtgacagacactgccctggagaggctgaccaagcaatcagatgcaacc
cgcaatcgcagacgcattatcaagaagtcatgcatcgatgatgagacagcgcgccaggag
attctggcgagcatagtactggccattccctacaacatggagcctcagacactagaggct
gtcacggctagaggatgtcctgcaatggttatgtgggctattattgatggcctactcccc
ggctttgacttcgccattcctcgcgacaagagcactcacgtcaggacgtttgtttcgaag
actgatcgttgccacattctttctcacttctactgcagaagaaagctacattatttccac
tacatgctcccgattttggccctagagcgtctgatcacccgcgatcagctagagaagaac
caggtgccagtgaagggcgtgcagttcagatgtcttcgagggcgatggtctgtcaataac
tttgacaaaagcggcctcgctaccatctgtggtgcgatgtgggaggtgctaattcccata
caagatatctctatggacatcaagatctataaaggagagaactttattttgagaattatc
gattatcagggtgagaacccgaagggctttaccctatataatggcatactagagattccg
ctcttatgtacgtctgtcaacggtgacaatgtcgccttttttgttcaccagaattcggag
ttgcagacttctatgccatataactgcgtcaactatgaacttatggtgaaggaggatgtg
gtagaacccctcaccagcgaaatggctatcgatctcaagtttaccgacattgcgtctccc
gcctcttacaagcactctcactttatttctaaaccaaatttgcagtatgaaattgtaaag
tgcgacaacgatgcaacgtataagcgacacgtttctgccattgcgcgattgtgtgcttac
aacccgtctgtatggagttatcttacctctaagaagtggacccgtgtgttgaatttgtct
tccgaagacttcgtggactcttccagtgagagagttcgactgacttcttttgactgtttt
atccgctttattctcctagcggactaccgcatggcacatgcgtttatggacctttataag
cagggagttgtcaccagatacggggaggtgttggacggcattaagacaaggacaactgac
agaaaagcagtcaaggatgtcattccccaggataaatattcggccaactccgatcccctt
atcgtccacaagtttttcaatctcgaggagcaatttaagcaacttaacatggatgttact
gcagagctggatcgtaatgagcagatgctcattgaaagccgaggcaactcgcgctctact
aagggacttcaaagctcttcaggctctagttctttctgccgcgaggggatagatgcattt
caaatcttgtcctttgctgcgactaaccaaaagaagaagctctctacgttgccctggaat
acaccgtataaagcgatggaagaggacaatctagacccaggcttgattgagaagtatgca
aacaactttgctcatctaaccaagggcgttaaggtgcgctcttccgaggattttgatatc
aacgaggttcttaagcgtgcaagctgtctcatgccgaaaactctaagatccaaagctgac
actgaacgcttgattagtgagttgtcggcttttctggacacactagaggaaaaggtgacc
ttgaacttttcacagaaggatgttatccagtatgttctttctcgacctattacgctagta
caaggccctccgggttgtggaaagaccttcattggcgcgtgccttgcttggctcttcagc
aaggtatacgggtcattagaccacgattcaggctcttttcgtcaggccacgccagtacct
gtgcttatctgctgtccctcaaacacggctgctgaaagtttaactcttgcactggaaccc
ttcggcctacctgttgtgagggttgtgagccttgcgcgacagcgcttggcagaatatgaa
gagtcgccgaatacgtatgcagacagagtgtgccttcatgtactgttcgaggagatcctc
aagctgaccttgggtgatgacgctccatccgattttacacctagcaaagaagcgcgccta
atctacgagaacatgttagatgagattcctgtcaaacagtttaacgaagtgtacaactac
ctgcagatgaagaagaaggagaatatcgacgttgctctaaagcagtctgcggaggaagag
atatccaaggcaatgtttgagatagaaaacataattatttcatccgccaaagttgttgtc
tgcacttgcagcacgtcatacgacaatcatctatctcgcgttcacttctcgtcactcatc
gtcgatgagtcaacccaagctatcgagccagacaccctctgcgccataggccacggctgt
tcacacatcgtccttatgggagatcacaagcagcttgggccgattgtagcaacgaacatt
gcgagacactctaaacttgatctgtcgctttacgaaaggctccagcgagccgggattgaa
ccgcattccttaacagtgcagtatcgtatgcatccggctttatcagcctttccatctaac
acattctacaatggaatgctacagaatggagtcacacaggcggacaggcagctcatcccc
aagcccttatcaattgactcgttcccgtggcccattccctcaactccgtcattcttttgg
cacgttcaaggaacacatgagataggccacggtacatctcttcgtaacgatactgagatt
ctgtgcgtagaagccattgttgaccagctactaaaatgctacgaattaaagcagagtgac
attggtatagtgaccccttatgactatcagaagtgtcagatagagatgcagctcaaggac
gctgggtattcagaggttttcgtcaacagtgttgatgcgtttcaaggccacgaaaaggag
gtaatcatctttagtactgtcagatcggttgataaacatataggatttttgaaggatcaa
agaaggcttaatgtcggtctgacacgctgccgctgcgcgctcataatagttggcaacgca
actgctctcgccattgatagtacttggcgttcgttgattcaacattactataacaacaaa
gttcttgtgatggggagagatctggatcagttattccagattgagtctctcgacgaggta
attcctaaggcatag
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integrated database retrieval system
