Giardia lamblia: GL50803_004328
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Entry
GL50803_004328 CDS
T01047
Name
(RefSeq) TFIIH basal transcription factor complex helicase subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
gla
Giardia lamblia
Pathway
gla03022
Basal transcription factors
gla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GL50803_004328
09124 Replication and repair
03420 Nucleotide excision repair
GL50803_004328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gla03021
]
GL50803_004328
03036 Chromosome and associated proteins [BR:
gla03036
]
GL50803_004328
03400 DNA repair and recombination proteins [BR:
gla03400
]
GL50803_004328
Enzymes [BR:
gla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GL50803_004328
Transcription machinery [BR:
gla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GL50803_004328
Chromosome and associated proteins [BR:
gla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GL50803_004328
DNA repair and recombination proteins [BR:
gla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GL50803_004328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
5696988
NCBI-ProteinID:
XP_001704126
UniProt:
A8BYS3
LinkDB
All DBs
Position
3:complement(312284..314806)
Genome browser
AA seq
840 aa
AA seq
DB search
MLIDVGGLSIVYPYPTVSKQQLQIMEHVCDVLRTGIGGKRALSLLEAKTGSGKTLAVLSA
AASFWDAYPTAISRIVFLCRTIPVVDHVLGEIFHLNKARSDAFKSVAGATASSAVTVGAE
PSLKKEPPNSSVRAPPFRKLRALPITSRRRLCVNESVSRAAYLDTECIKITRGVDLEDTV
MCPAFKKTLEEEGELSIGRESYTIPEFINQCRTYNGGVVCPYFANRRLLHTADIIVGSYN
YVLDPKCAGPLGAILDQNTLLIIDEAHNLEYAACDAMSMHLSYKLVVDCEQSIHAMSASI
AHSARPPPPPFSPDRSFLRKERAIKTVQQDSRLLFSGSAPADVLLLSSESYAAVKTPQQF
LSGLLRIVRLLKEQLSDRLTKDVVSLPHVDVLNLVRLQFITESFLQLSPEYLHYYQSYYC
IFDKNLPQLVQFLSLLGYFGSVETLKHFRTYSSSLSYEKFFTVIQKPQTSMGDDDTLLAH
TQQIFEHSKHQTLYRLVCQDPFIALRPVYQYFPLIMMMSATLFASYECTDTSINSSGVAE
ATKPSLIERILGITMYAEQCERSVEPVVKKCIIESGAQSNICIKIIGKGADQAKLTTQFF
FRTTPSAVQNYGRILAQISSSTADGLIVFFPSYRFMEDLITLWNITSSNMFRVITNNKLV
FFETPDPIETMHAVACYRKCCDSGRGAVLFAIARGKLSEGIDFKYHHARSIILIGVPYLY
SGSTLIHMKLNYLNAKFGIKPSEYIHFDAGRVLTQCIGRVTRKDNDYAAVILADERFGEC
IKWTTRWMQEMVRGKNSQITTQDEAIRTIRAFFIQQARDTNRRINADFFNENDGPGDFSQ
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgttgattgatgtcggtggcctctccattgtctatccatatcccaccgtcagtaaacaa
cagctacagatcatggagcatgtgtgcgatgtcttgcggacagggataggggggaagcgg
gctctttctcttcttgaagcaaagacagggtctggcaagacactagctgtgttgtcggca
gctgcgtccttttgggacgcatatcccacggccatatctcgcatagtctttctctgtcgc
actatccctgttgtagaccatgtgctcggggaaatctttcaccttaacaaagcccgcagt
gatgccttcaagtctgtagccggagctactgcttcttctgctgttactgtgggtgcagag
ccttcactaaagaaagaacccccgaattcaagtgttagagccccgccattcagaaagcta
cgagcattgcctattacatcgcgcaggcggttgtgcgttaatgaatctgtttctagagct
gcatacctagacacagagtgcattaaaatcactaggggcgttgacttggaggataccgtc
atgtgcccagcgttcaagaaaacactcgaagaggaaggtgagctatccataggcagagaa
tcgtacaccattccagagtttattaatcagtgtagaacgtacaatggcggagtagtgtgc
ccttattttgctaatcgtcgtttactccatacagccgatataatcgtaggaagctacaat
tacgtgttagatcccaagtgtgcaggaccgctgggtgcaatactggatcagaacacgctc
cttatcatagacgaggcgcataatttagagtacgctgcttgtgatgcaatgtccatgcac
ctgagctacaaattggtagtggactgcgaacaatctattcacgcgatgtcggcctcaatt
gcacacagcgcacgtccaccgccgcctccattctcacctgataggtcctttttgcgcaaa
gagcgggcaatcaagacagtccagcaggacagcaggctcctcttctctggctcagctccg
gcagatgtgctcttactctcatcagaatcttatgcagctgtcaaaacacctcagcagttt
ttgtccggactgctaaggatagtcaggttattaaaggagcagctctcggaccgcttgact
aaggacgttgtgtctcttcctcacgtggatgtgctgaaccttgtgcgcttgcagtttatt
accgagtcctttcttcagttgtcacctgagtatctacactattatcaatcatattattgt
atatttgataagaaccttccacaattagttcagttcttgtccctgttggggtactttggg
agtgttgagacactaaagcacttccgaacatactcatcctctcttagctacgaaaagttc
ttcactgtcatacaaaaacctcagacctcaatgggtgacgacgacactctgctggctcat
acacaacagatatttgagcacagcaagcatcagacgctgtatagacttgtgtgccaagac
ccgtttatcgctttacggccggtataccagtactttcctctgatcatgatgatgagtgca
actctgtttgcctcctatgagtgtacagatacctcaattaactcatccggagtggcagag
gcgactaagccctcattgatcgaacgcatattaggaataaccatgtacgctgagcaatgc
gagcgctcagtggagcctgttgttaagaagtgtattattgaaagcggagcacagtccaac
atatgtattaagataattggtaagggggcagaccaggcgaagcttacaacacagttcttc
ttcagaaccaccccatcggcagtgcagaactatggtcggatacttgctcagatatcatca
tccacagccgacggccttatcgtcttcttcccgtcgtatcgcttcatggaagacctcata
accctgtggaacataacgtcctcaaatatgtttagagtcataacaaacaataagcttgta
ttcttcgagacgccagaccccattgaaacaatgcatgcagtagcttgttatcgaaagtgc
tgtgacagtggaaggggagcagttttgtttgctattgcgcgcggaaagctatcagaggga
atagactttaagtaccaccatgctcgcagcataatactcattggtgtgccgtacctatac
tccggcagcacccttatccatatgaagctaaactaccttaacgcaaaattcggcataaaa
cccagcgaatacatccactttgatgcagggcgtgttttgacccaatgtatcggcagagtg
acaagaaaagataacgattatgccgctgtcatcttggctgacgagagattcggagagtgc
atcaagtggactacccggtggatgcaagaaatggtccgtgggaagaacagccaaataacc
acacaggacgaagccatccggactatacgtgcctttttcatccagcaggctagagataca
aacagacgcatcaatgctgatttcttcaatgaaaatgatgggccaggtgattttagccag
taa
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