Giardia lamblia: GL50803_008361
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Entry
GL50803_008361 CDS
T01047
Name
(RefSeq) SOF1 protein
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
gla
Giardia lamblia
Brite
KEGG Orthology (KO) [BR:
gla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gla03009
]
GL50803_008361
04121 Ubiquitin system [BR:
gla04121
]
GL50803_008361
Ribosome biogenesis [BR:
gla03009
]
Eukaryotic type
90S particles
Other 90S particles
GL50803_008361
Ubiquitin system [BR:
gla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
GL50803_008361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Sof1
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_DCAF12
WD40_RFWD3
PROPPIN
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
5698101
NCBI-ProteinID:
XP_001705201
UniProt:
A8BRU6
LinkDB
All DBs
Position
4:2461298..2462848
Genome browser
AA seq
516 aa
AA seq
DB search
MTQVRTIVRSREDGARRGGYRTATTGHDHFQVEKEFVRALTAAKLKQMFAKPFIRAMNDH
VDGVYNIARHPSSITTFATASVDGSVKIYDISSGAQLSSLTAHTGWITGVCFPACTADMM
VTCARDSLLRFWKLPDIYALNDQSVPLHRREIQLISSINLEASPAGLAHHAADRKLALAT
PTGVHIFDHERQEALACLTYSDGGIMDSSFSTVQFNQAEQHLVAATSETYCVFFDVRVHR
PAFRFSLWSRPSCITFNNYYPNVLAIGANDGYCYSFDIRNFSRNDNYRALDRFTGNTGAV
LSCAFSPDGSVLATGGYDKAVRLYDVRTVGPNMTLKNHRGEVIFQSLETAGLPMGETRDK
LEMAEYSNQETMCSDVSKSRNHPFAFNIQPYDTYHNPRMMRVWALAFSGDGRFLLTGSDD
ANLRVWKTRASESLKTLTRSEADAIDYRETLVNKFQNVPAVRQVLKSHRLPHLLTVARRR
AIIHNQAERRKDENRRTHRHEEVPSAASRVVHSVDK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagtcaggacaattgtacggtctcgagaagacggtgcgcggcgcggaggctat
aggacggcaaccacaggtcacgatcacttccaagtcgaaaaagagtttgttcgggctctc
actgcagccaagctgaagcaaatgtttgccaagccttttatcagagccatgaacgatcac
gttgacggagtttataatattgcacgccacccttcttctattaccacatttgccacggcc
agcgttgatggatctgttaagatctatgacatctcctctggtgcgcagcttagctctctc
acagctcacactggctggattaccggagtttgctttccggcgtgtactgctgacatgatg
gtcacctgtgcacgtgactctttgttgcgtttctggaagctcccagacatatatgccctc
aacgatcagtcggtgccacttcatagaagagaaattcagctcatctcatccattaatctg
gaggcgtcgccggccggcctggcgcaccatgcagcggatcggaagctcgcgctggctacc
cctaccggagtccacatctttgaccacgaacgccaagaggcgcttgcttgtctgacatac
tctgatgggggcatcatggactccagcttttctaccgtgcagttcaaccaggcagagcag
catcttgtcgcagcgacttcggagacatactgtgtcttctttgacgtgcgtgtgcaccgt
cctgcctttcggttctctttgtggagcaggccgtcgtgcatcactttcaacaactactac
cctaacgtgcttgctatcggggccaacgacgggtactgctactcctttgatataaggaac
tttagccgcaacgacaattatagagcactggacagattcacaggaaacactggtgcagtt
ctgtcgtgtgccttttccccagacggaagcgtcctagcgacgggtggttatgacaaggct
gtacggctgtatgatgtacggaccgttgggcctaacatgactctgaagaaccaccgtggt
gaggtcatcttccagtcattggagacggctgggcttcccatgggggagacacgcgacaag
ttggaaatggctgagtacagcaaccaggagaccatgtgctccgatgttagcaagtcgcgg
aatcaccctttcgcatttaacatacagccatacgacacctatcataaccctcgcatgatg
cgtgtctgggcacttgcattcagcggcgatgggcgcttcctacttactgggtcggatgat
gcaaacctccgtgtgtggaagactagagcatctgagtcactgaagaccttgacgaggtca
gaagcagacgccatcgactaccgagagacgttagtcaacaagttccagaacgtgccagca
gtccggcaggtgttaaagagtcatcgcttgcctcacctccttactgttgcacgccgacga
gcaatcatacacaatcaagccgagcggaggaaagacgagaacagacgtacgcatagacac
gaggaggtgccgtctgcggcttcccgtgttgttcacagcgttgacaagtga
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integrated database retrieval system