KEGG   Giardia lamblia: GL50803_008361
Entry
GL50803_008361    CDS       T01047                                 
Name
(RefSeq) SOF1 protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
gla  Giardia lamblia
Brite
KEGG Orthology (KO) [BR:gla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gla03009]
    GL50803_008361
   04121 Ubiquitin system [BR:gla04121]
    GL50803_008361
Ribosome biogenesis [BR:gla03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    GL50803_008361
Ubiquitin system [BR:gla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     GL50803_008361
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Sof1 EIF3I Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_2nd Ge1_WD40 Beta-prop_DCAF12 WD40_RFWD3 PROPPIN WD_LRWD1
Other DBs
NCBI-GeneID: 5698101
NCBI-ProteinID: XP_001705201
UniProt: A8BRU6
LinkDB
Position
4:2461298..2462848
AA seq 516 aa
MTQVRTIVRSREDGARRGGYRTATTGHDHFQVEKEFVRALTAAKLKQMFAKPFIRAMNDH
VDGVYNIARHPSSITTFATASVDGSVKIYDISSGAQLSSLTAHTGWITGVCFPACTADMM
VTCARDSLLRFWKLPDIYALNDQSVPLHRREIQLISSINLEASPAGLAHHAADRKLALAT
PTGVHIFDHERQEALACLTYSDGGIMDSSFSTVQFNQAEQHLVAATSETYCVFFDVRVHR
PAFRFSLWSRPSCITFNNYYPNVLAIGANDGYCYSFDIRNFSRNDNYRALDRFTGNTGAV
LSCAFSPDGSVLATGGYDKAVRLYDVRTVGPNMTLKNHRGEVIFQSLETAGLPMGETRDK
LEMAEYSNQETMCSDVSKSRNHPFAFNIQPYDTYHNPRMMRVWALAFSGDGRFLLTGSDD
ANLRVWKTRASESLKTLTRSEADAIDYRETLVNKFQNVPAVRQVLKSHRLPHLLTVARRR
AIIHNQAERRKDENRRTHRHEEVPSAASRVVHSVDK
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgacacaagtcaggacaattgtacggtctcgagaagacggtgcgcggcgcggaggctat
aggacggcaaccacaggtcacgatcacttccaagtcgaaaaagagtttgttcgggctctc
actgcagccaagctgaagcaaatgtttgccaagccttttatcagagccatgaacgatcac
gttgacggagtttataatattgcacgccacccttcttctattaccacatttgccacggcc
agcgttgatggatctgttaagatctatgacatctcctctggtgcgcagcttagctctctc
acagctcacactggctggattaccggagtttgctttccggcgtgtactgctgacatgatg
gtcacctgtgcacgtgactctttgttgcgtttctggaagctcccagacatatatgccctc
aacgatcagtcggtgccacttcatagaagagaaattcagctcatctcatccattaatctg
gaggcgtcgccggccggcctggcgcaccatgcagcggatcggaagctcgcgctggctacc
cctaccggagtccacatctttgaccacgaacgccaagaggcgcttgcttgtctgacatac
tctgatgggggcatcatggactccagcttttctaccgtgcagttcaaccaggcagagcag
catcttgtcgcagcgacttcggagacatactgtgtcttctttgacgtgcgtgtgcaccgt
cctgcctttcggttctctttgtggagcaggccgtcgtgcatcactttcaacaactactac
cctaacgtgcttgctatcggggccaacgacgggtactgctactcctttgatataaggaac
tttagccgcaacgacaattatagagcactggacagattcacaggaaacactggtgcagtt
ctgtcgtgtgccttttccccagacggaagcgtcctagcgacgggtggttatgacaaggct
gtacggctgtatgatgtacggaccgttgggcctaacatgactctgaagaaccaccgtggt
gaggtcatcttccagtcattggagacggctgggcttcccatgggggagacacgcgacaag
ttggaaatggctgagtacagcaaccaggagaccatgtgctccgatgttagcaagtcgcgg
aatcaccctttcgcatttaacatacagccatacgacacctatcataaccctcgcatgatg
cgtgtctgggcacttgcattcagcggcgatgggcgcttcctacttactgggtcggatgat
gcaaacctccgtgtgtggaagactagagcatctgagtcactgaagaccttgacgaggtca
gaagcagacgccatcgactaccgagagacgttagtcaacaagttccagaacgtgccagca
gtccggcaggtgttaaagagtcatcgcttgcctcacctccttactgttgcacgccgacga
gcaatcatacacaatcaagccgagcggaggaaagacgagaacagacgtacgcatagacac
gaggaggtgccgtctgcggcttcccgtgttgttcacagcgttgacaagtga

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