Glaciimonas sp. PAMC28666: JQN73_01505
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Entry
JQN73_01505 CDS
T07066
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
glc
Glaciimonas sp. PAMC28666
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
glc03009
]
JQN73_01505 (rlmD)
Enzymes [BR:
glc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JQN73_01505 (rlmD)
Ribosome biogenesis [BR:
glc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JQN73_01505 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
MTS
TRAM
PCMT
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
Methyltransf_23
UPF0020
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QRX83008
LinkDB
All DBs
Position
complement(347171..348535)
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AA seq
454 aa
AA seq
DB search
MHQDITIDIKSLDMDARGIGHLQNEDGTQGKVIFVEGALPGENVSFHSFRKKKKWEFATM
TALHRESVSRIKPRCQFYGVCGGCAMQHLEPSAQVAIKQRVLEDNLWHISKIKADLILRP
LFGPTWAYRYRARISVRNVPKKGGVLVGFHERKSPYVTNMTSCEILPANVSAMLVPLRGL
IGSLTIIEHLPQIELAVGENAQGEVTVMVLRIMAPLSKEDEVKLKAFADEYAVQWWLQTG
APETAAPFYPAQSDLYYTLPEFNVRMPFKPTDFTQVNHQINRVLVAKAMRLLGVQPEERV
ADLFCGLGNFTLPLATLVREVVGIEGSEALVARSRENAIVNQLAEKTTFYCRNLFEATTA
DFIALGKFDRMLIDPPRDGATAVCSAIIGLAELHRDMMPKRIVYVSCSPSTLARDAGTLI
QGGYRLSQAGVVNMFPHTAHVESIAVFDLVEALT
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcatcaagacatcaccatcgatattaaatcgctcgacatggacgcacgtggcattggt
cacctgcaaaatgaagatggcacacaaggcaaagtcatttttgttgagggggcgctcccc
ggcgaaaacgtcagctttcactcatttcgcaaaaaaaagaaatgggaattcgcgaccatg
accgccttgcatcgggaatcggtatcgcggatcaaaccacgctgccagttttatggggtt
tgcggtggctgcgcgatgcagcacttggagccaagtgcccaagttgcgataaagcaacgc
gtcctcgaagacaatctttggcatattagtaaaatcaaagctgatctgatattgcgccct
ttatttggaccgacatgggcatatcgctaccgcgcccggatttcagtacggaacgtgccc
aaaaaaggtggtgttctggttggttttcacgaacgtaaatccccttacgtcaccaacatg
actagctgcgaaattttgccggcgaacgtatccgctatgttagtgccattgcggggattg
atcggctctctcaccatcattgagcatttgccacaaattgaattagccgtgggtgaaaac
gcgcaaggcgaggtcaccgtaatggtgttgcggattatggcgcccttaagcaaagaagat
gaggtgaagcttaaggcgttcgcagatgaatacgccgtgcaatggtggcttcagaccggt
gcgccggagacggcagcgccgttttatcctgcgcaaagtgatttgtattacaccttgccc
gaatttaatgtacgcatgccctttaagcccaccgatttcactcaggtgaatcatcagatt
aatcgtgtcctggtagcaaaagcaatgcgcctcctcggcgtacagcctgaagagcgggtc
gctgatttgttttgcggcttaggaaatttcaccttgcccctggcgacgttagttcgcgag
gtggttggcatcgagggaagcgaagcgttagttgcgcgctcccgagaaaatgcaatcgtc
aatcaactagcagaaaaaacgactttttattgccggaatctttttgaggctaccaccgca
gattttattgcgctcggcaaattcgaccgcatgttaatcgatccgccgcgtgatggcgca
acggccgtttgctccgccattattggtttagcagagttacatcgagacatgatgccaaag
cggattgtctacgtctcgtgcagcccgtcgaccctcgcgcgggacgcgggaacgctgatt
cagggcgggtatcggctgtcgcaggcgggtgtggtcaatatgttcccacacactgcgcat
gtggaatcgattgcggttttcgacctggtggaagcgctgacatag
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