Glaciimonas sp. PAMC28666: JQN73_03540
Help
Entry
JQN73_03540 CDS
T07066
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQN73_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glc03019
]
JQN73_03540
03009 Ribosome biogenesis [BR:
glc03009
]
JQN73_03540
Enzymes [BR:
glc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JQN73_03540
Messenger RNA biogenesis [BR:
glc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQN73_03540
Ribosome biogenesis [BR:
glc03009
]
Prokaryotic type
rRNA processing factors
JQN73_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRX83355
LinkDB
All DBs
Position
791751..794975
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARTYFKEGVDVRSASIKEALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPSGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGTQGNGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIHEQAQ
QFMAHVMPDMVHRVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETR
LKDALRYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDIESSALQ
VLRIIQEEAMKENSAAIHVQAPVDVAGFLLNEKRGEILKIETRHRVAVILIPNKHLETPH
YKLERLKHDDPRLEETQASYAMAEQADTDIGYSKRQKEEGKPRQEAVVKGITPDQPAPIV
ERKPIAVAPVVATAAAAGEGLLAKIMAFFFKKPASTEVAIAPVATAAKPSRERGNDRNGR
GQRGRNRGGRNRDRDEEGTETREENANSAKKPVVAEVVVAANSESKTQQRQPRPPREPKE
AREPREPREPNEGRQRGERTPRPPREDRKEVAIEVKKEELPLNVALVEASLAPVGVTPEQ
ANDTESLDAGAPRVDGEAGEGEEPRRRRRRGGRNRNRRDRDSTESGVEGSESTPDGWADL
VESAEHAPVSHNAPSALASETLVAVAPIHLPATESVAPIAVIDTPAALVAAPAVFVPSIE
TAETAKTVETTVLSAAIAAPAAPQQVVALQEEAKSSEQLTEVATAATHVEPVEALAKVTP
TVQAAIQAPEIAAVTEKPALAEATFAEAKVAETKIAEIEVPEIVKETQVIDVPVAVEAAP
ANGGVIEAPHVMVHAVNTAQVVTTPDAVHHAPVTAVETTAPIAISAASSSSDDLQSALDS
AGLTLAGTDPAKLLAAQEAASKIVVAPRTPRERKPRPVMTDEPLVQIETETNRQ
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgctacgcagcaagaagaattgcgcgtagcgatcgttgac
gggcaaaaactcatcgacatcgatatcgaaaccaccggacgcgaacaacgcaagtccaat
atctacaaaggtgtgattacccgtatcgagccgtcgttggaagcctgcttcgttaattac
ggagaagaacgccacggcttcctgccgtttaaagaagttgcccgcacctactttaaagaa
ggcgtcgatgtccgcagcgcgtcaattaaagaagcgttgcgtgaaggccaggaaatcatg
gtccaggtcgagaaggaagagcgcggcaataaaggcgccgcccttacctctttcgtatca
ttggctggtcgttacctggtattgatgcctaacaaccctcgcggtggtggtgtttcccgc
cgtgtggaaggtgaagatcgccaggaattgcgcgaaacgatggacaaactggatttgcct
tcaggcatgtccgtaattgcccgcacagccggtatcggccgcaatgttgacgaattgcaa
tgggatttgaactacctgatgcaattatggcgcgctatcgaaggcgctggcacccaaggt
aacggcgctttcctgatttatcaggaatcatcgctggttatccgtgctattcgcgattat
ttccaacctgatatcggcgaaattctgatcgataccgacgaaattcacgagcaagcacaa
caattcatggcgcacgtgatgccggatatggtgcaccgggttaagcgttatcacgacgat
gttccgttgttctcgcgttttcagatcgaacatcagattgaaactgcctattcccgcacg
gttccactaccgtccggtggcgcgatcgtcatcgatcataccgaagcactggtttcggtc
gacgttaactccgcacgggcaacccgcggcagcgacatcgaaacaaccgcgtttaatacc
aattgcgaagccgctgaagaagttgcccgccaattgcgtttgcgcgatttgggtggtctg
atcgtcatcgacttcattgacatggagaacgcgaagaatcaacgcgaagttgaaactcgc
ctgaaagacgcgctgcgttatgaccgtgcacgtgtacaaatgggcaagatttcccgcttt
ggcctgatggagttgtcgcgtcagcgtctccgtccgtcactgtccgaaggaagtcatgta
acttgcccacgctgtaacggcaccgggcacatccgcgacatcgaatcttccgccttgcaa
gtcctgcgtatcattcaggaagaagcaatgaaggaaaattccgccgcgattcatgtccag
gcaccggtagatgtcgccggattcctgctaaacgaaaagcgtggcgagatcctgaagatc
gaaacccgccatcgtgtcgccgtgatcctcattccaaacaagcatctggaaacgccgcat
tacaagcttgagcgtttgaaacatgacgatccacgccttgaagagacccaagccagttac
gccatggcagaacaagctgataccgacatcggttacagcaagcgccaaaaagaagaaggc
aaaccgcgtcaggaagcggtggtcaaaggcatcacgccagaccaacctgcacctatcgtg
gagcgtaagccaatagctgtagcacctgttgtcgccaccgcggctgcggctggcgaaggt
ttgcttgcaaagatcatggcattcttcttcaaaaagccagcgtcgacagaagtagccatt
gcgcctgtcgcaacggcagccaagccttcccgcgaacgcggcaatgatcgcaatggtcgt
ggtcagcgtggtcgcaatcgcggcggtcgcaatcgtgaccgtgacgaagaaggcacagaa
acgcgcgaagaaaatgctaacagtgcgaaaaaaccggtagtagcagaagtggttgtcgca
gctaattcagaaagtaaaacgcaacagcgacaaccgcgcccaccgcgtgaaccaaaagaa
gcgcgtgagccacgtgagccccgggaaccaaacgaaggccgtcaacgcggcgaacggaca
ccacgtccgccacgcgaagaccgcaaagaagttgccatcgaagtcaagaaagaggagctg
cctcttaacgttgcattggtggaagcgtcgttggcacctgtcggcgttacgccagagcaa
gctaatgataccgaatcgctggacgcaggcgcacctcgagtggacggcgaagcgggcgaa
ggcgaagaaccgcgtcgtcgtcgtcgtcgtggcggtcgtaatcgtaaccgtcgtgatcgc
gatagtacggagagcggcgttgaaggtagcgaaagcacaccagacggatgggccgatttg
gtcgagagcgcagaacatgcgccggtcagccataacgctccatcggcacttgcttcggag
actctcgttgccgttgcgccgatccatctgcctgcgactgaaagcgttgccccaatcgcg
gtaatcgacactcccgccgctttggtggcggcgccagcggttttcgtaccctcaatagaa
acagcagaaacagcaaaaacggtagaaacgactgtgttgtcagcggctattgccgccccc
gctgctcctcagcaagttgttgcccttcaggaagaagcaaagtcatctgaacagctaact
gaagtagcgaccgcggcgactcatgtcgagccagtggaagcactggcaaaggttacaccg
actgtccaagcggctatccaagcgccagaaattgctgcagtgacggaaaaaccagcgtta
gctgaagccactttcgctgaggcaaaggttgctgaaaccaagattgctgaaatcgaggtc
cctgaaatcgtcaaggaaactcaggtgatcgacgttcccgtggcagttgaagccgcacct
gcgaatggtggtgttattgaagcgccgcatgtgatggtacatgcggtcaatacggcccaa
gtcgtaactacaccggatgcagtgcaccacgcacccgtaactgcagtagaaacgacagcg
ccgatagcgatatcagcggcctcttcttcaagcgatgacttgcaaagcgctttggattcc
gctggcctgaccttggccggaaccgatccagccaaactacttgcggcacaagaagcggcg
tcgaaaattgtggttgcgccacgtactccacgtgaacggaaaccgcggccagtaatgact
gacgagccattggtgcagatcgaaactgaaacgaatcggcagtaa
DBGET
integrated database retrieval system
