Glaciimonas sp. PAMC28666: JQN73_04880
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Entry
JQN73_04880 CDS
T07066
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQN73_04880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glc03019
]
JQN73_04880
Enzymes [BR:
glc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQN73_04880
Messenger RNA biogenesis [BR:
glc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQN73_04880
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
P-loop_SecA
TP2
AF-4
Motif
Other DBs
NCBI-ProteinID:
QRX83576
LinkDB
All DBs
Position
complement(1167324..1168877)
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AA seq
517 aa
AA seq
DB search
MPDTQSEKQQEIIIASDDETSAPSIRFTDFGLSPDILRALSDQGYVNPTPIQAQAIPIVL
QGRDVMGAAQTGTGKTAGFALPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAEN
VKAYCRHTSLRATVVFGGIDMAPQTAALRSGIEIVIATPGRLLDHVQQKTISLSQTQILV
MDEADRMLDMGFLPDLQRIINLLPKERQSLMFSATFSAEIKKLAGSFLKNPVTIEVARSN
ATADNVTQTMYRIDDQSKLDAVSFIIRERNLKQVIVFSNTKIGASRLAKHLESEGVNASA
IHGDKSQNERMAALEAFKQGEIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIG
RTGRAGASGDAISLCTDKDERLLVDIEKMIKHKFVRAELVGFVAKPRVSERERSPRREEG
DSRGNGRSDSRSDARSDSRSGSRSDSRTDSQSGSSDRSQQHTRSAYTSLPRKEKIDPWFL
KPYEPTLSSVESAQNQGTLPVKPKHKLAALLGGMPKR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacactcagtctgaaaagcaacaagaaattatcatagcgtccgatgatgaaaca
tctgcgccttccattcgatttaccgattttggattatccccagacatcctgcgagcgttg
agcgatcaggggtatgtcaatccgacgccgattcaagcgcaagcaattccgatcgtttta
caaggtcgcgatgtcatgggcgcagcacaaacggggactggtaaaacggcgggatttgcg
ctgccgattattcagttgctgctagcgcatgcaaatactagcgcatcgcctgcacgtcat
ccggtacgtgcgctgattttgaccccgacgcgtgaattagcggaccaggtggcggaaaac
gttaaagcgtattgccgccatacttccttgcgcgctacggtggtgtttggcggtatcgat
atggcaccgcaaaccgcagcgctgcgttccggtatcgaaatagtgatcgcaacgccaggt
cgtttgcttgatcatgtgcagcaaaaaactataagcttgtcacagacgcaaattctggtg
atggatgaggctgacaggatgctcgatatgggtttcctgcctgatttgcagcgcattatc
aacttgttgccaaaagaacggcagagtctgatgttttcggcgacgttttccgccgaaatc
aaaaagctcgcaggtagcttccttaaaaatccggtcactattgaggtcgcacgcagtaat
gcgacggctgacaatgtcactcaaacgatgtatcggattgatgaccagtcaaagctggac
gccgtgtcatttatcattcgcgaacgcaacctgaagcaggttatcgtgttttcgaacact
aaaattggtgcatcgcggctggcaaaacatctggagagcgaaggcgtcaatgcttccgca
atccacggtgataaaagtcaaaacgagcgcatggctgccttggaagcttttaagcaaggc
gagattgaggtgttggtcgcgaccgatgtcgctgcccgcggtctcgatatcgccgaatta
ccttgcgtcattaacttcgatttgccttataacgctgaagattatgtgcatcgtatcggt
cgtaccggccgtgctggcgcgtcgggtgatgccatttcgttgtgtaccgataaagacgaa
cggttattggtcgatatcgaaaagatgattaagcacaagtttgttcgtgctgaattggtc
ggctttgtggccaagccgcgcgtttccgagcgcgaacgttctccgcgccgcgaagagggt
gattcacgcggaaatggacgctcggattctcgttcggacgcgcgctcagattcacgctca
ggctcgcgctctgacagcagaaccgattcccaatccggctcgtcggatcgtagtcagcag
catacccgcagcgcttacacatcgttgccgcgcaaagaaaaaattgatccatggtttctg
aagccgtacgaaccgacactgtcgtcggtcgagagcgcacagaatcaaggaacacttccg
gtcaagccgaaacataagcttgctgcgttattgggtgggatgcctaagcgttaa
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