Glaciimonas sp. PAMC28666: JQN73_13720
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Entry
JQN73_13720 CDS
T07066
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JQN73_13720 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glc03400
]
JQN73_13720 (sbcB)
Enzymes [BR:
glc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JQN73_13720 (sbcB)
DNA repair and recombination proteins [BR:
glc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JQN73_13720 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JQN73_13720 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JQN73_13720 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QRX81247
LinkDB
All DBs
Position
complement(3195960..3197393)
Genome browser
AA seq
477 aa
AA seq
DB search
MSNHTFLWHDYETFGAQPRRDRPAQFAAIRTDAELNEIGDPIMLYCKPAPDFLPDPQSCL
ITHITPQQCLERGVPEFQFAAEIERAFSKEGTIGVGYNTIRFDDEITRFMFWRNLIDPYA
REWQNNCGRWDILDVVRTAYALRPDGITWPINDEGRPSFRLEHLTAANGLSHEAAHDALS
DVRATIALARLIREHQPKLFEFCLGLHKKDRVAVELGLTTKKPFLHISGMFPAEQGCVAL
MWPLGVHPTNKNEILAWNLAFDPSELFDLDPDIVRTRLFSKTADLPEGMTRLPLKSIHMN
KSPMVIGNLKTLSPEMTAKWGVDRALALSHAEIAARAPDLTMLWKQVFQRPAEGPMDVDE
DLYGGFIGNGDRRTLTDLRAMPPQKLALATPQFDDLRLEELLFRYRARNFPQTLSEPETQ
RWEEHRAARLFDGKGGARNIDDFFASIDALSETADERGEEILGELYDYVEMIAPERD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcacacctttctctggcacgactacgaaacttttggggcacaaccgcgacgt
gaccgcccggcgcaatttgccgcgattcgcacagatgccgaattgaacgaaatcggcgat
ccgatcatgctttattgcaaacccgcaccagattttttgcctgatccgcaatcttgcctg
atcacgcatatcacgccacagcaatgccttgagcgcggtgttccggaatttcaatttgcg
gccgagattgaacgcgctttttccaaagaaggcacgatcggtgtcggatacaacacgatt
cgtttcgacgatgaaatcacacgtttcatgttctggcgcaatctgattgatccttacgcc
cgcgaatggcaaaataattgcgggcgctgggatatcctggatgttgtgcggactgcctat
gcgctgcgcccggatggcataacgtggcccatcaacgacgaaggtcggcctagttttcgc
ctggaacatctaaccgccgccaatgggctgagccatgaagctgcgcatgacgcgctgtcg
gacgttcgcgccaccatcgctctggcccggttgatccgtgaacatcaacccaaattattc
gagttttgtcttgggctacataaaaaagaccgggtcgctgttgagctgggcctgaccaca
aaaaaaccgttcctgcatatttctggcatgtttccggcggagcaagggtgcgtggcctta
atgtggccgctaggggtgcatccaaccaacaagaatgagattttggcctggaatctggct
tttgatccaagtgaattattcgacctggatccagacatcgtgcgcacacggctgtttagt
aaaaccgcggatttaccggagggaatgacccgcttgccgttgaagtccatacacatgaac
aaatcgcctatggtcatcggtaatttgaaaacgctgtcaccggaaatgaccgccaaatgg
ggtgttgaccgcgcactagcgctgtcgcacgccgaaatcgccgcgcgcgcgccggatctg
actatgctatggaagcaagtattccagcgccccgctgaaggcccgatggatgtcgatgaa
gatttatacggcggctttattggaaatggggatcgccgcactctgactgatttaagggcc
atgcccccacaaaaactggctctcgcaacgccacaatttgacgatctgcggctggaagaa
ttgttgttccggtatcgcgccaggaatttcccacaaaccttatcggaaccagaaactcag
cgatgggaagagcatcgtgccgcacgtctgtttgacggcaaaggcggcgcacggaatatc
gatgacttttttgcctcaatcgatgccctgtcagagaccgccgacgagcgcggcgaggag
atactgggagagctgtacgattatgtcgaaatgatcgcgcctgaaagggactaa
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