Glaesserella sp. 15-184: CJD39_00945
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Entry
CJD39_00945 CDS
T05643
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gle
Glaesserella sp. 15-184
Pathway
gle03030
DNA replication
gle03430
Mismatch repair
gle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJD39_00945
03430 Mismatch repair
CJD39_00945
03440 Homologous recombination
CJD39_00945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gle03032
]
CJD39_00945
03400 DNA repair and recombination proteins [BR:
gle03400
]
CJD39_00945
Enzymes [BR:
gle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CJD39_00945
DNA replication proteins [BR:
gle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CJD39_00945
DNA repair and recombination proteins [BR:
gle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CJD39_00945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AUI65227
LinkDB
All DBs
Position
complement(195984..199460)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSQPRFVHLKVHSDFSMINGLAKVKPLVKTCVANNMVAMALTDFTNFCGLVRFYGEALGA
GVKPIVGADVVVRTEPDSDELFELTLLAKNNTGYHNITLLLSKAYQQGYVEFPIVEKAWL
AEHNDGIILLSGGRNGDVGKALLKENLLEAEQLLAFYQQHFPNHYYLSLCRTGRADEERY
IQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKRPQKYSEQQYFR
SEEEMCRLFADLPQALDNTLLIAQRCNVTIRLGEYFLPNFPTGELSTEDFLVKKAREGLE
ERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVSET
YGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLAKAFDVEPKL
PELYDTDEEVKALVDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEREGKEPVRIESIPLDDEKAFKLLK
AAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLESGMVQNFIDRKHGKEQI
AYPDAQYQHPSLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
AQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE
FMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFSVNEKGEIVYGLGAIKGV
GEGPIDAMLDARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIMAGAFDKLGPHRAALMKN
LEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTPKWTEQTILDNEKATLGLYL
SGHPVGRFLKELSHYAPNKLNEVQPTYRGQTTTVAGLIMGARIATTKKGNRLGIATIEDR
SGKMDLTLFSEALENYGDLLQKDQIIIATGSVQHDDFSGGLKMAVREMITLDEARSRYAR
SLALAIKQEQLSAKFVKDLTAIIEPYKEGTLPLHFYYESPEGRVLLRSGIEWRVTPKEAM
LIQLKSFLGESAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaccccgttttgttcacctaaaagttcacagtgatttctcgatgattaacggc
ttagccaaagtgaagccgttggtcaaaacttgcgttgccaacaatatggtggcaatggca
ttgaccgattttacgaacttttgcggtttggtgcggttttatggtgaagcgttaggggct
ggggtgaagccgattgtcggagcggacgtggtggtgcgtaccgagcctgacagcgatgag
ctgtttgaactcactttattggcaaaaaacaatactggctatcacaacattaccctttta
ctttcaaaggcttatcaacaaggctatgtcgaatttccgattgtggaaaaagcgtggttg
gcggaacataatgatggcattattttgctttcaggcggtcgcaatggtgatgtcggcaag
gcgttactcaaagaaaatttgcttgaagcggaacagttactcgcgttttatcagcaacat
ttcccgaaccattattacctttccctttgtcgaacagggcgtgctgacgaagaacgttat
attcaacaagcggtcactttctcacaaaaatttgccattccgctggtggctgtcaatgat
gtgatgtttttaaaacaggacgattttgaagcccacgaaatccgtgtcgccattcacgac
agctttaccctagacgatccgaaacgtccgcaaaagtattcggaacagcaatacttccgt
tccgaagaagagatgtgtcgcctgtttgccgacttaccccaagcccttgacaataccttg
ctaattgctcaacgctgtaatgtgacgattcgcttgggtgagtattttttaccgaatttc
ccgacaggtgagctttcaaccgaagactttttagtgaaaaaagcccgtgaaggtttggaa
gaacggttggcgtttctgttccctgatcctgatgttcgagcaagcaagcggtcagtttat
gatgaaagattgcaagttgaacttgatgtgatcaaccaaatgggctttccaggttacttc
ttgattgtaatggagtttatccagtggtcgaaagataacgatattcctgttggtccagga
cgtggctcgggggcaggatcgttggtggcgtatgccttgaaaattaccgatttagatccc
cttgagtttgatcttctttttgagcgttttttaaaccctgaacgtgtctcaatgcctgac
tttgacgtggatttctgtatggacggtcgagatcgggtgattgaacacgtctctgaaacc
tatggtcgccaagccgtttcgcagattatcacctttggtacaatggcggcgaaagcggta
atccgagatgttgggcgtgtgttaggacacccttacagctttgtggatcgaatttccaaa
ctcattccgcctgatccaggtatgacgctggcgaaagcctttgatgttgagccgaaattg
cctgaactttacgatactgatgaagaagtcaaagcgttggtggatatggctcgtaagctc
gagggcgttacccgaaatgcaggaaaacacgctgggggcgtggtgattgccccaacggcg
atcaccgatttttcaccgttatattgcgacagtgagggcttgcaccctgttacccatttc
gataaaaatgatgtggaatatgcaggcttagtgaagtttgacttcttaggcttgcggacg
ctcaccattattaaatgggcgttggaaatgatcaatcaacgccttgagcgagagggcaaa
gagcctgtacggattgagagcattccccttgatgatgaaaaagcattcaaattgctgaaa
gcggcgaaaaccacagcggtgttccagctagagtcccgtggaatgaaagatctgatttca
cgacttcagccgagtaactttgaagatattattgcgttggtagccctgttccgtcctggt
ccgcttgaatcgggaatggtgcagaactttatcgaccgtaaacacggcaaagagcagatt
gcgtatcctgatgcccaatatcagcacccgtctctacaaccgattttagagccgacttac
ggcattatcgtctatcaagagcaggtaatgcagattgcacaggtgttggcaggctatacg
ttgggcggagcggacttattgcgtcgtgcaatgggtaagaaaaagcctgaagaaatggcg
gctcaacgggcgacttttgaagagggagcgaaaaagcaaggtattgacggcgagttggcg
atgaaaattttcgacttggtggaaaaattcgcaggctatggctttaacaaatcgcactcg
gcggcttatgcgttggtctcttaccaaaccttatggctcaaaacccactatcctgcggag
tttatggcggcggtaatgacttccgagatggacaacaccgataaaatcgttggcttttat
gatgaatgtatcaatatgggcttaaccgtggtgccgcctgatattaacagcggaaaacac
cgttttagcgtcaatgaaaaaggcgaaattgtctatggcttaggggcaatcaaaggcgtg
ggcgaaggcccgatagatgcgatgttagacgctcgtaacaaagacgggattttcaaagat
ctgttcgatctgaccgctcgtgtcgatttgcgaaaagtaaaccgccgcacctttgaaggc
ttaattatggctggggcgtttgacaagctcggtccacaccgtgcggcgttaatgaagaat
ttagaagatgccctgaaagcgtccgatcaacatagcaaaatggaagccttagggcaaagc
gatatgttcggtgtgttaaccgaaactcccgaagaagtgcaaaatgcctatgccaacacg
ccgaaatggacggaacaaaccattttggacaatgaaaaagcaactttaggcttatatttg
agcggacatcctgtcggacgctttttaaaagagctttcccattatgctccaaataaatta
aatgaagttcagccgacttatcgtgggcaaaccaccacagtggcaggcttgattatggga
gccagaattgcgaccaccaaaaaaggtaatcgtctcggtattgccactattgaagaccgt
tcgggcaaaatggatttaacgctcttttcagaagcccttgaaaactatggcgatctgcta
caaaaagatcagattattatcgctacaggttcggtgcaacacgatgatttcagtggcggc
ttaaaaatggcggtgcgtgagatgattacccttgacgaagcccgtagccgttatgcaaga
agtttggcgttggcgattaaacaagaacagctttctgcaaaatttgttaaagatctgacc
gctattatcgagccatacaaagagggaacactaccgcttcacttttactatgaaagccct
gaaggacgagtcttactacgaagtggtattgaatggcgggttacaccaaaagaagctatg
ctaatacaattaaaatcctttctaggtgaaagtgccgtagaattggagtttgaatag
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