Glaesserella sp. 15-184: CJD39_02545
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Entry
CJD39_02545 CDS
T05643
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gle
Glaesserella sp. 15-184
Pathway
gle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJD39_02545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gle03019
]
CJD39_02545
03009 Ribosome biogenesis [BR:
gle03009
]
CJD39_02545
Enzymes [BR:
gle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJD39_02545
Messenger RNA biogenesis [BR:
gle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJD39_02545
Ribosome biogenesis [BR:
gle03009
]
Prokaryotic type
rRNA helicases
CJD39_02545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUI65527
LinkDB
All DBs
Position
556973..558814
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AA seq
613 aa
AA seq
DB search
MTETTLTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAF
SLPILAQLDPEQRHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIR
ALKNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPED
HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALDKLKSGRLDVIV
ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI
EHLIKKPIDEVPVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPEIRPARGERGKGRENPRSAERRGGGREHRDNNGVAMDLYR
IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVEHFAHKAR
VLSKPMQMSLLGAASSATNANPYEDKGSRGKGRSDRHERGGRGGRDSRREERGFKERKEG
GFKEKRFSDRGRR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaactttaacctttgccgatttaggcttaccacaatctatccttgacgct
gtaaatgaaatgggttttgtaaccccatcaccaatccaacaagcctgtattccacaccta
ttaaatggtcgtgatgtattaggtatggcacaaacgggtagtggtaaaacagcggcattt
tctctgccgattttggcacaacttgacccagaacaacgccaccctcaaatgttagtgatg
gcaccaactcgtgagcttgcaattcaagtggcagatgcttgtgaacaatttactaaaaat
atgcgtggtattcgcacggtcaccatttatggcggtcagcgttatgatattcaaatccgt
gctttgaaaaatggcgctcaagtggtagtgggtacaccggggcgtattcttgaccatatt
cgtcgtggcacgctagatctttcaatgctaaaagcaatcgtacttgatgaagcagacgaa
atgttacgtatgggctttattgaagacgtggaaacggtaatggctgaattgccagaagat
caccaaacggcacttttctcggcgacaatgccagagccgatccgccgtattaccaagcgt
tttatgaaagatccgcaagaagtgaaaattcaagcgacccaacgttctgcccctgatatt
gctcaaagttactggttagtgaacggtttccgtaaaaatgatgcattattacgcttctta
gaagtggaagaatttgatgcagcgatcatctttactcgtaccaaaacggggacgattgat
attgcggaactttgcgaacgcaacggctatcgtgcagcagcgttaaacggtgatatgacc
caacaagcccgtgagcaagcattggataaattaaaatcaggtcgtttagatgtgattgta
gcaacagacgtggcggctcgtggtatcgacattgaacgcatcagccttgtagtgaactac
gatattccgctagatgccgagtcatatgttcaccgtatcggtcgtacaggtcgtgcaggg
cgttcaggtcgtgcgttattgtttgtagaaccccgtgagcgtcgcttattgaaaaatatc
gaacatctgattaaaaagccgattgacgaagtgccagtgccaaatcacgaaattttaatg
gaaaaacgccgtgagaaattcaaagcacgcatttcattgcagttagaacaccacgattta
gagctttaccgtgagttgctcgaagatttattcaccgcagaccaagaccacgaagaatta
gcggcggcgatgatgatgttgttacaagagaagcaaaaacttattcttccgcctgatcct
gaaattcgtcctgctcgtggtgagcgtggcaaagggcgtgaaaatccacgttcagcagag
cgccgtggtggcggtcgtgaacatcgtgataacaacggcgtggcaatggatctctaccgt
atcgaactcggtcgtgaagatggtgttgaagtacgccacattgtcggggcgattgctaat
gaaggtgatatcaatagccgctatatcggacatatcaaattgcacgataaatactcaacc
attgagctaccacaaggtatgccgaagcatttagtggaacactttgcacacaaagctcga
gtattaagcaaaccaatgcaaatgtctctattaggggctgcaagtagtgcaaccaatgca
aacccttatgaagataaaggttctcgtggaaaaggcagaagcgatcgtcatgagcgtggt
ggacgtggtggcagagatagtcgtcgcgaagaacgtggttttaaagagcgtaaagaaggc
ggatttaaagagaaacgttttagcgatcgcggtcgtagataa
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