Glaesserella sp. 15-184: CJD39_08455
Help
Entry
CJD39_08455 CDS
T05643
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gle
Glaesserella sp. 15-184
Pathway
gle03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gle00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJD39_08455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gle03021
]
CJD39_08455 (rpoC)
03400 DNA repair and recombination proteins [BR:
gle03400
]
CJD39_08455 (rpoC)
Enzymes [BR:
gle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJD39_08455 (rpoC)
Transcription machinery [BR:
gle03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJD39_08455 (rpoC)
DNA repair and recombination proteins [BR:
gle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJD39_08455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Baculo_helicase
Herpes_PAP
Motif
Other DBs
NCBI-ProteinID:
AUI66599
LinkDB
All DBs
Position
complement(1787111..1791394)
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQSKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVIEPGMTDLEKNQLLTEEQFLDAEERWGDEFEAK
MGAEGIQALLKDLDLEHQCEMLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRITEYEKNASGEFEATTSLVDTTIGRAILWMISPKGMPFKLFNQTLGKK
AISKLINESYRRLGLKESVVFADQIMYTGFAYAARSGSSVGIDDMVIPAQKYDIISAAEE
EVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVLNREGQPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGSEEVLIPRNTLIDEKWCDVIDRESVDVIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKAVTNKDGKLVLTSRNTELTVVDAFGRTKENYKVPYGAVLSKVDGADVNAGEVVAN
WDPHTMPIISEVSGFIKFSDIVDGLTVTRQTDELTGLSSVVVQDVGERATAGKDLRPALK
LVDAQGNDILIAGTDVAAQYFLPGKAIVTLNDGAEISVGEALARIPQESTATKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETHEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVARVKIANRKRVAEGKPEVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHKERAKRRISDEEIN
IAQAAVSASSFATAEEIEAETQSFVNDEATQNLAALLNAGFDAEDEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaagcacaatcaaaatcaaacgatgatttcgatgtg
attaaaatcggtttagcttcgccagataagatccgttcgtggtctttcggtgaagtaaaa
aaaccagaaaccatcaactaccgtacattcaaacctgagcgtgacggtcttttctgtgcg
cgtattttcgggcctgtgaaagattacgaatgtctttgtggtaaatataaacgcttaaaa
caccgtggtgtgatttgtgaaaaatgtggcgttgaagtcacgcaaaccaaagttcgccgt
gaccgtatgggtcatatcgaattggcttgccctgtggcacacatttggttcttaaaatcg
cttccgtcccgtatcggcttaattcttgatatgccgttgcgtgatattgaacgtgtgctt
tattttgaaagctatgtggtgatcgagccgggtatgactgatttagagaagaatcagtta
ttaaccgaagagcagttcttagacgcagaagagcgttggggcgatgagtttgaagcgaaa
atgggtgcagaaggtatccaagcgttactcaaagacttagatttagaacatcaatgtgaa
atgttgcgtgaagagttacaagagaccaactctgaaaccaaacgcaaaaaaatcactaaa
cgcttgaaattacttgaagcattcattcaatcaggcaacaaacctgaatggatggtgatg
accgtattaccagtgcttccgccagatcttcgtccgttagtaccgcttgatggtggtcgt
tttgcgacttcagatctgaacgatttatatcgccgtgtgatcaaccgtaacaaccgttta
aaacgtcttttagacttaatcgcaccagatattatcgtgcgtaacgaaaaacgtatgtta
caagagtcggtcgatgcgttattagataacggtcgccgtggtcgtgcaattacgggttct
aacaaacgtccattaaaatctttggcagatatgatcaaaggtaaacaaggtcgttttcgt
cagaacttgttaggtaaacgtgttgattattcaggtcgttcggtaatcaccgtaggtcca
tacttacgcctacatcaatgtggtttgccgaagaaaatggcgttggaattattccgtccg
tttatctactcaaaattagagagccgtggcattgcttcaaccattaaagcagcgaagaaa
atggttgagcgtgaagatccgattgtatgggatattcttgcagaagttatccgtgaacac
ccgatcctgcttaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccg
ttgttgattgaaggtaaagcgatccagttacacccacttgtgtgtgcggcgttcaacgcg
gacttcgatggtgaccaaatggcggtgcacgttccattaacgttagaagcgcaattagaa
gcccgtgcgttaatgatgtccaccaacaacgtactttcaccagcgaacggcgatccgatt
atcgtaccaagccaagacgttgttctcggtctttactatatgacccgtgagaaagtaaac
ggcaaaggcgaaggcatgtacttccttgacccacgtgaagcggaaaaagcataccgcaca
ggtcaagcggaattacactctcgtgtcaaagtgcgtattaccgaatatgagaaaaacgca
agcggtgagtttgaagcgacaaccagcttagtggataccacgattggtcgtgcgatctta
tggatgatttcaccaaaaggtatgccgttcaaactgttcaaccaaaccttaggcaaaaaa
gcgatttcaaaattaatcaacgaaagctatcgccgtttagggttgaaagaatcggttgtg
tttgctgaccaaattatgtacaccggttttgcttatgcggcacgttctggttcatcggtt
ggtattgacgatatggtgatcccagctcagaaatatgacattatttcagcggcggaagaa
gaagttgcagagatccaagagcagtttaactcaggtcttgttaccgctggtgagcgttat
aacaaagtgatcgatatttgggcggcagcgaatgagcgtgttgccaaagcgatgatggaa
aacttatcgacagaagaagtgttaaaccgtgaaggtcagccagagaaacaagcatcattc
aacagcatctttatgatggcggactcaggggctcgtggttctgcagcacagattcgtcag
ttagcgggtatgcgtggtttgatggctcgtccagacggctcgatcatcgaaacgccaatc
acggcaaacttccgtgagggcttgaacgttcttcagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggatacggcgttgaaaacagcgaactctggttacttgacccgccgt
ttagttgatgtggcacaagacttagtgatcatcgaagacgactgtggcactcacgaaggt
atcgtgatgactccacttatcgaaggtggcgatgtgaaagaagccttgcgtgatcgtgtg
ttaggtcgtgtggtagcggaagatgtgttaaaaccaggttcagaagaagtgttaatccca
cgcaacaccttaatcgatgagaaatggtgtgatgtgatcgaccgtgaatctgttgatgtg
attaaagtgcgttcagtggtaacctgtaacacagactttggtgtctgtgcgaaatgttac
ggacgtgatttggcgcgtggtcacttaatcaaccaaggtgaagctatcggtgttattgcg
gcacagtcaatcggtgagccgggtacacagctaacgatgcgtacgttccatatcggtggt
gcggcatctgcggcagccaaagagtctagcattcaagtgaaaaatgcgggtacgattaaa
ttaaccaacgctaaagcggtgacgaataaagacggcaaattagtactcacgtctcgtaac
accgaattaacggtggtggacgcattcggtcgtaccaaagaaaactataaagtgccttac
ggcgcagtactttcaaaagtcgatggtgctgatgtaaacgcaggtgaagtggttgcgaac
tgggatccgcatacaatgccgatcatctcggaagtaagcggtttcatcaagtttagcgac
atcgtggacggcttaaccgttactcgtcaaacggacgaactcacaggtttatcatctgtg
gtagttcaagacgtgggtgaacgtgcgacagcaggtaaagatttacgtccagcattaaaa
ttagttgatgcacaaggtaacgacatcttaattgcaggcacagacgtagcggcacaatac
ttcctaccaggtaaagcgattgtgaccttaaatgacggtgcagaaatctctgtgggtgaa
gcgttagcacgtattccacaagaatcaacggcaaccaaagatattaccggtggtcttcca
cgcgtagcagacttatttgaagctcgtaaaccgaaagagccagcgatccttgcggaaatt
tcaggtatcgtttcatttggtaaagaaaccaaaggaaaacgccgcttgttaattacccca
gcggaaggcgagacacacgaagagatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtacaacgtggtgatgtgatttccgatggtgcagaaacaccacacgacatc
ttacgcttacgtggcgttcacgccgtaactgactacatcgtaaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaatgacaagcacatcgaagttatcgtacgtcaaatg
ttgcgtaaagcggttatcaccaacgcttacgactcagagttcttagaaggcgaacaagtt
gaagtggcacgtgtgaaaattgccaaccgcaaacgtgttgccgaaggtaaaccagaagtg
gaatttgaacgtgaattgctcggtatcaccaaagcatcacttgcaacagagtcatttatc
tctgccgcatcgttccaagaaaccacccgtgtgcttaccgaagctgccgttgcaggtaaa
cgtgacgaattacgtggcttaaaagagaacgtcatcgtgggtcgcttaatcccagcaggt
actggttttgcttaccacaaagagcgtgcaaaacgccgtatctctgacgaagagatcaac
atcgcacaagcggcagtttccgcttcttcttttgcaaccgcagaagagatcgaagccgaa
acccaaagcttcgtaaacgatgaagctactcaaaatcttgcggcattattaaacgcaggt
tttgacgctgaagacgaagagtaa
DBGET
integrated database retrieval system
