Geobacillus lituanicus: GLN3_10470
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Entry
GLN3_10470 CDS
T05193
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gli
Geobacillus lituanicus
Pathway
gli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLN3_10470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gli03400
]
GLN3_10470
Enzymes [BR:
gli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLN3_10470
DNA repair and recombination proteins [BR:
gli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLN3_10470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASS87469
LinkDB
All DBs
Position
2112539..2116072
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGIHARLKEQLVAGLSGSARSVFVSTLYKETGRPLLVVAYNL
FQAQKMYDDLVSLLGPDEVFLYSVDEVIAAEMAVASPELKAQRLEIMNHWVQGGKGIVVC
PVAGLRRLLPPPSLWKQYLFTFTVGQELDLEQYKQRFVQMGYKRVATVSAPGEFSIRGGI
VDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSHGQVESIAIGPADEIILDEGTRQRGI
ERIEAGLAASLEKMKDDAAKQRMYEQIHAELEQLREGREIEQQYKYMSLFYENVSSLLDY
MPEDGVLLMDEMSRLQETAERLDREEADWYTSLLDSGKIIHDVPISHSLSELLKKHRFQR
VYLSLFLRHAPYTHPQNVVNITCKQMQNFHGQMALLQSEVERWKKANYAVVFLAPDAERA
KRLQSVLEDYGVDAAPLPPEAALLYGKCQLLEGDLNTGFELPLQKLAVITEEELFKKRAK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRTKKQQAETIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTFAHGRMSETELESTILAFLEGQYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGLKREDERPE
VTIDVEVDAYIPDAYISDGLQKIEMYKRFKAVETLEDVEALREEMVDRFGDYPDAVAYLL
QIAEIKALAKQLGVESIKQHKQQVDILFTEEASKTVEIQRLSGVGRQYGRLFGFGMEGVK
LKIVLYIKQMKAHEWLAILYETLRELSGVKNEKSIIA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcattgcatcgctatttagctgagaaccaagatgttcgcaccatcatagaagga
atccacgcccgcctgaaagaacagcttgtcgccgggctgtcggggtcggcccggtctgtt
tttgtttccacgctttataaggaaacgggacgcccgttgctcgtagtggcttacaacttg
tttcaggcgcaaaaaatgtatgatgacctcgtttcgctgctcggtccggacgaggtgttt
ctgtattccgtcgatgaagtgatcgccgccgaaatggcagtcgccagtccggagctgaag
gcacaacgcctcgaaattatgaaccattgggtgcaaggcgggaaggggatcgtcgtctgt
ccggtcgccggcctgcggcgcttgctgccgccgccatcgctttggaaacagtatttgttc
acgttcacggttggacaagagctggatctcgagcagtataaacagcggtttgtccaaatg
ggatacaagcgggtggcaactgtttccgcccctggggagttcagcatccgcggcggcatc
gtggatatttatccgctcacggccgagctcccgtaccggatcgagctgtttgatacggaa
atcgaatcgattcgcacgttcacccccgatgatcagcgctcgcacgggcaagtagagagc
atcgccatcggcccagccgacgaaatcattctcgacgaggggacgcggcagcgggggatt
gaacgaattgaagccggtttggcggccagcctcgaaaaaatgaaggatgacgccgccaag
cagcggatgtacgaacagatccatgccgaattggaacagttgcgcgagggccgggaaatc
gagcaacaatataaatatatgtcccttttctatgagaacgtttcaagtttgctagattat
atgccggaagacggcgtgctgctgatggatgaaatgagccggttgcaggagacggcggag
cggctcgaccgcgaagaagcggattggtatacaagcctgcttgacagcgggaaaatcatt
catgatgtgcccatttcacactcactttctgaattgttgaaaaaacatcgattccagcgg
gtctatttgtccttgtttttgcgccatgcgccttatacccatccgcaaaatgtcgtcaat
attacgtgcaagcaaatgcaaaacttccacggacaaatggcgcttctccagtctgaagtc
gagcgttggaagaaagcgaattacgccgtcgtctttttggcgccggatgccgaacgggca
aaaaggctgcagtcagttttggaagattatggggtcgatgcagcgccgcttccgcctgag
gccgcactgctttacggcaaatgccaacttctcgaaggcgatttaaatacaggatttgag
ctgccgctgcaaaagctggctgtcattacggaagaggaactgtttaagaagcgagcgaaa
cgcccggtgcgccggcaaaagctgtccaacgccgagcggatcaaaagctacgctgaactg
caagtcggcgattacgtcgtccatgtcaaccacggcatcggaaaatatttaggcatcgag
acgttagaaatcaatggagtgcataaagactacatccatatccaatatcaaggcggcgac
acgctgtatgtcccggtcgaccaaatagatcaagtgcaaaagtacgtcggttcggaagga
aaagagccgaaaatttataagcttggcggctcggaatggaaaaaagtcaaaaagaaagtg
gaatcgtctgttcaagatatcgcggaagatttgatcaagttgtatgccgagcgcgaggcg
agcaaggggtacgcgttttcgccggacacggaaatgcagcgcgaatttgaggccgcgttt
ccgtatcaagagacggaagaccagctccggtcgattgaagaaattaagcgcgatatggaa
agcgaaaagccgatggaccgcctcctttgcggcgatgtcggctacgggaaaacggaagtg
gcgctgcgcgcggcgtttaaagccattatggacggcaagcaagtcgcttttcttgtgccg
acgacgattttggctcagcagcattacgaaacggtgcgtgagcggtttcaaggatttccg
attaacgtcgggctgctcaaccggttccgcacgaaaaaacagcaggcggagacgatcaaa
gggttgaaagacggcacaatcgatatggtcattggcacgcaccggctgctgtcgaaggat
gtcaagtttaaggatttagggttgctcatcatcgacgaggagcagcggtttggcgtggcg
cataaagaaaaaatcaagcagctgaaagcgaatatcgacgtgctcaccttaacggcgacg
ccgattccgcggacgcttcatatgtcgatgatcggcgtgcgcgatttatcgatcatcgag
acgccgccggaaaaccggttcccggtgcagacgtatgtcatggaatatacgccggagctt
gtcaaagaggcgattgaacgtgagctcgcccgcgatgggcaagtgtttttcctctacaac
catattgaagacatcgacttgaaagcggaagaaatcgcccagcttgtcccggaagcacgc
gtcacgttcgcgcacgggcggatgtcagaaaccgaacttgaatcaacgattttagcgttt
ttggaaggacaatatgacgtgctcgtgacgacgacgattattgagacaggcgtcgatatt
ccaaacgtcaatacactcatcgtgtacgatgccgaccggatggggctgtcgcagctgtac
cagctgcgcgggcgcgtcggccgttcgaaccgcgttgcctacgcgtatttcacctaccgg
aaagacaaagtgctgaatgaaacggcggaaaaacggctgcaagccattaaagagttcacc
gagcttggctccggctttaaaatcgccatgcgtgacttgtcgatccgtggcgccggcaat
attctcggcgctgaacagcacggctttatcgactcggtcggatttgacttatattcgcaa
atgttgaaagaggcgatcgaaaaacggcgcggcttgaaacgggaagacgagcggccggaa
gtgacgatcgacgtggaagtcgacgcctacattccggatgcctacatttccgatgggctg
caaaaaatcgagatgtacaagcggtttaaagcggtcgagacgctcgaagatgttgaagcg
ctgcgcgaagagatggtggaccgcttcggcgattatccggatgccgtcgcctatttgctg
cagattgccgagatcaaagcgctggcgaaacagctcggtgttgaatcgattaagcaacat
aagcagcaagttgacattctattcactgaagaagcgtcgaaaacggtggagattcagcgc
ttgtccggcgtcggccgccagtacgggcgcctgtttgggtttggcatggagggggtgaag
ctgaaaattgtgctttacattaagcaaatgaaagcgcacgagtggctggcgattttatat
gagacgttgagggaattgtccggagtgaaaaacgaaaagtcgatcatcgcctag
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