Geobacillus lituanicus: GLN3_16665
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Entry
GLN3_16665 CDS
T05193
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gli
Geobacillus lituanicus
Pathway
gli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLN3_16665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gli03019
]
GLN3_16665
Messenger RNA biogenesis [BR:
gli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GLN3_16665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ASS88504
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Position
3351532..3353202
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AA seq
556 aa
AA seq
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MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMFPEDEMFGIDKVIPDIA
YLIERQHRIQAIFLTHGHEEHMGAIAYVLKQLSVPVYGTKLTLGLAEAILKEQGIANAKL
NEIHPDAELLFDKAKVTFFRTIHSIPDSIGISLHTSQGAIVYTSDFKFDQTPYGNNRADL
GKMAQIGEQGVLCLLSDSTNAERPGYSGSDTAVAHEIADVIGHAKGRVFVACYASNITRI
QQVLYAAKQYGRKVAVIGKTLHKIMDIAVRLGYLHLPDKVTISAYDLDRYGDDELVILTT
GGHGEPMSALWRMARQANKQVNIKEGDTVIVAASVMPGYELGFSKTIDALYRAGANVIYR
DRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHARLAKAVGISEERTFLLDKG
EVVEFRGGAARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
IAAGPEIISRGFVYMREAETLLEEAEQMVAEIIKRCLESYMLEWSSLKANIREALSQFLF
EKTKRKPMILPIIMEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatccaaaataaagccagtagagaaaatacgcatttttgcccttgggggagtcggg
gaaatcggcaaaaacatgtatgtcgtcgaattggacgaggacattttcgtcctcgatgcc
ggggtgatgttcccggaagatgagatgtttggcattgacaaagtcatcccggacattgcc
tacttaattgaacggcagcaccgcattcaggcgatttttctcactcacgggcatgaggag
catatgggagcgatcgcctacgtgctcaagcagctgtctgtgccagtctacgggacgaag
ctgacgctcgggttggcggaagcgattttaaaagagcaaggcattgcaaacgccaaactg
aatgaaattcatcctgacgctgaactgctgtttgacaaagcaaaagtgacgtttttccgc
acgatccacagcatccccgattccatcggcatcagcctgcatacatcgcaaggggcgatc
gtgtacacgagcgattttaaatttgaccagacgccgtatggcaataatcgcgccgacttg
gggaaaatggcgcaaatcggcgaacaaggggtgctttgtcttttgtcggacagcacgaat
gccgagcgtccgggctacagcggctctgatacagccgtcgcccatgagattgcagatgtg
atcggccacgcgaaagggcgcgtgtttgtcgcctgctatgcctcgaacattacgcgcatc
caacaagtgctttacgccgccaagcagtacgggcgcaaggtggcggtgatcggcaaaacg
ctgcataaaattatggacatcgccgtccgcctcggttatttgcatctgccggataaggtg
acgatttctgcctacgacttggaccgctatggggatgatgaactcgtcattttgacgacc
gggggtcatggcgagccgatgagcgcgctttggcgcatggcgcggcaggcgaacaagcag
gtgaacattaaagaaggagacaccgtcatcgtcgctgcttctgtcatgccggggtatgag
cttgggttttcgaaaacgatcgacgccctataccgggctggggcgaacgtcatttaccgc
gatcggcaagtgcacgtgtccgggcacggctgccaagaagagcttaagctcatgcttaat
ttgatgaagccgaaatatttcatcccggtgcatggggagtaccgaatgcaaaaggcgcac
gcccggttggcgaaggcggtcggcatctcggaagagcggacgtttttgcttgacaaaggt
gaagtggtcgaatttcgcggcggagccgcccgccctggcggtaaagtgccgtacggcaac
attttaatcgatggcctcggcatcggcgacgtcggcaacattgtgttgcgcgacaggcgt
ttgttgtcgcaggacggcattttgatcgccgtggtgacactaaacaaagaagcgaaaacg
attgctgctggaccggaaatcatctcgcgcggattcgtttatatgcgcgaggcggagacg
ctgttggaagaggctgagcaaatggtggcggagatcattaagcgctgtctggaatcatac
atgctggaatggtcatcgttaaaggcgaacattcgcgaggcgctaagccagtttttgttt
gagaaaacgaagcgaaagccgatgattttgccgattattatggaggtataa
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