Gloeobacter kilaueensis: GKIL_0196
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Entry
GKIL_0196 CDS
T02885
Symbol
rnb
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
glj
Gloeobacter kilaueensis
Brite
KEGG Orthology (KO) [BR:
glj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
glj03016
]
GKIL_0196 (rnb)
Enzymes [BR:
glj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GKIL_0196 (rnb)
Transfer RNA biogenesis [BR:
glj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GKIL_0196 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AGY56443
UniProt:
U5QC93
LinkDB
All DBs
Position
218289..220271
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AA seq
660 aa
AA seq
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MDKGTLVEFRLHGNRHLGVVSGPDGKKNFNLQTPNGHIQTVHPRQITYTVAGGPYRNSEL
PAFEAQAEALLAQADLELAWELFRETHALVTPAELAQLLFSSEGPVAGYAAFRLLADDKL
YFKQKGEGYEPRSPLQVEELRHQQAIEQRRAFEQAQFLERIQAALSGAIVSWQKSDQQRL
DALERYGLWGEEASDRSLAQDVLQQLGRATRPEEATALLIALGIWSAHENLALRRSNIPV
HFSEAVLDYARRVLTKAPPDRDERRDFGRLAVYTIDDESTREIDDGLSLEPLEGGREKVW
IHIADPSRWVFLGDPLDLEARRRATSVYLPTGAIPMFPPLLATGPMSLLPGQINCALSFG
AVIAPDGALESFEVTPALVRTVYPVSYDEADPLIASGEEPVLARLHEIALLRRNYRHGHG
AITIELPEAQVKVKGEQVNLEILGDSAARVLVSEMMILVGELTARLALDAGIAVPFRTQG
APDLPGADELMRLPAGPVREFAICRCMQRSEVSVYAARHGGLGLDAYVQATSPIRRYSDL
LVHYQIKAHLRGETPPLSLESLKDLLAMIDSAGYEVTQIERLSDRYWTYEYLRHRRQQLQ
PGLVLDYMGGDPQRALVLLENVALRLPVRFDRPVSRGEMVDLQITHVDPRQDLLVLKEAR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gtggacaaaggtaccctggttgaatttcgtctgcacggcaaccgccacctgggggtggtc
agcggcccggacggtaaaaagaacttcaacctgcagacgccgaatggccacatccagacc
gttcatccccgccagattacctacacggttgcgggcgggccctaccgcaacagcgaacta
ccggccttcgaggcccaggccgaagccctgctcgcccaggccgatctcgaactggcctgg
gagttgttccgcgagacccacgcgctggtgacgcccgcagaactggcgcagttgcttttt
agtagtgaaggcccggtggccggctacgccgcctttcgcctgctggccgacgacaagctc
tacttcaaacaaaaaggcgagggctacgagccgcgttcgcctctccaggtcgaggagttg
cgccaccagcaggcgatcgagcagcgccgggcttttgagcaggcccagtttcttgagcgc
atccaggctgccctgagcggtgcaatcgtcagctggcaaaaaagcgaccagcagcgcctc
gacgccctcgagcgctacgggctctggggcgaggaagcgtccgatcgctcgctcgcccag
gatgtgctgcagcagttgggccgggccacccgtccggaggaagcgacggcgcttttgatt
gccctggggatctggtcggcccacgaaaatctcgccctgcgccgctcgaatattccggtc
cacttcagcgaggcggtgctcgactatgcccggcgggtgcttaccaaagcaccgcctgac
cgggacgagcgccgcgattttggcaggcttgccgtctatacgatcgacgacgaatctacc
cgcgagatcgacgatggcctcagcctcgaacccctcgaaggggggcgcgaaaaagtctgg
attcacatcgcggatccgagccgctgggtttttctgggcgaccccctcgatctcgaagcg
agaaggcgggcgaccagcgtctacctgcccaccggtgccatcccgatgttccccccgctg
ctcgcgacaggaccgatgagtctgttgcccggccagatcaactgtgcgctgagcttcggt
gctgtcatcgctccggatggagccctcgaaagcttcgaggtgactcccgcgctggtgcgc
acggtctatccggtcagctacgacgaggccgaccctttgatcgccagcggcgaggagcca
gtactcgcccgcctgcacgaaattgccctgctgcggcgcaactatcgccacggccacggt
gcgatcaccatcgagctgcccgaagcccaagtcaaagtcaaaggcgaacaggtcaacctc
gagattttgggcgactccgctgcccgcgtgctggtctccgagatgatgattctggtcggt
gagctgaccgcccggctggccctcgatgccggtatcgctgtaccctttcggacccagggg
gctcccgacctgccgggagccgacgagttgatgcgcctgcccgccggtccggtgcgcgaa
tttgcgatctgccgctgtatgcagcgatcggaggtgagcgtctacgctgcccgccacggc
gggttggggctcgatgcctacgtgcaggccacctcgcccatccgccgctactccgacttg
ctggtccactaccagatcaaggcccacctgcgcggcgagacgcctcccctcagcctcgaa
agcctcaaggacctgctcgcgatgatcgacagcgccggttacgaagtcacccagatcgaa
cggctcagcgaccgctactggacctacgagtacctgcgccaccgccgccaacagttgcag
ccgggcctggtgctcgactacatgggcggcgatccgcagcgcgccctggtactgctcgaa
aatgttgccctccggctgccggtgcgcttcgatcggcccgtctcgcggggcgaaatggtc
gatttgcagatcacccacgtcgatccgcgccaggatctgctggtgcttaaagaggcgcgc
tga
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