Glutamicibacter sp. M10: N6V40_15770
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Entry
N6V40_15770 CDS
T10283
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
glm Glutamicibacter sp. M10
Pathway
glm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N6V40_15770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glm03400
]
N6V40_15770 (mfd)
Enzymes [BR:
glm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N6V40_15770 (mfd)
DNA repair and recombination proteins [BR:
glm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N6V40_15770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXN31757
LinkDB
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Position
complement(3246107..3249718)
Genome browser
AA seq
1203 aa
AA seq
DB search
MSLSGLHDFLREEPSFRRIRQSAANSFSTRSEELEIAAPQGMRAILSAQISQALSESKHS
GVTLIVTATGREAEEVSSSLNAFLPTEQIAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HNRDENLNVVIAPIRAVLQPLVAGLGELRPVTLELDAEPGFDQVIKDLASAAYARVDMVT
HRGEFAVRGGIIDVFPPTLDHPVRIDFFGDQIDSMRFFAIADQRSTDDQGPQKIIATPCR
EMLITPQVMSRAANLKNHFPAAEEMLTKIAGGIAVEGMESLAPLLVDHMVPLLSLLPESS
IALVMEPERVRARAQDLNATNAEFLAAAWASASDGATAPLDLNTASSERKLASGDFASLS
ETLEHAKAAKVSWWALTAMGEDEELEVGASTIRIPAREPHGYQGDIEAMMEFIASRVKDQ
WRFVVATDGPGPAQRLSELFAEFSIPAHRVETLDQAPTAGLIEITQATAGRGFVFEELKL
GLLTEADLLGRSSAYPNRKGRKLTAKRKRNAVDPLSLQAGDFIVHEQHGIGKFVELMARK
VAGSGKDAKREYLVVEYASSKRGAPGDRLFVPTDQLHMVTRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFGQDTPWQHELEEAFAFIETPDQLTAINEV
KSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLASQHQQTFTER
YSGFPVRVKTLSRFQTAKESKEIMAGLQDGSVDIVIGTHRLLSKNVQFKNLGLVIIDEEQ
RFGVEHKEELKKLRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIERVAAELRELAPEARIEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDVEKPLGEIALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIAAAETDE
ALTEVREELVDRYGKLPQPVENLMRVAALRIRARAVGLNDIQQIGNNIKVSPAKIEDLPA
SRQVRLERLYPGAANKPALNSIFIPKPRTSPIGGRDLVDEEILEWAEKLLYAIFEPTPAP
ATK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcggacttcatgacttcctgcgcgaggaaccatccttccgtcgcatccgc
caaagtgcagcgaatagcttttctacgcgtagtgaagagctggagatcgcggccccgcaa
ggcatgcgtgcgatcctctctgcccagatttctcaggcgctaagcgagagcaaacattct
ggagtgaccctgattgtcactgccaccggtcgtgaagccgaagaagtatcaagctcactg
aacgcctttcttccaacagagcagattgctgaattcccgtcgtgggagaccttgccgcat
gaacgtctctcacctcgtagtgacacggtgggacgtcgcctcgaagtactgcgccggcta
cacaaccgggacgaaaatctcaacgtggtgatcgcacccatccgagcagtgctacaacca
ctcgttgctggcctaggtgaactgcgcccggtgaccttggaactagacgccgaacctgga
tttgatcaggtcatcaaggatctcgcatcagctgcctatgctcgggtggacatggtcacg
caccgaggcgagtttgccgtacgtggtggcatcatcgatgtcttcccaccaacgttggac
catccggtccgtatcgattttttcggtgaccaaattgattcgatgcgtttcttcgccatc
gccgatcagcgctccaccgatgaccagggcccacaaaagattattgccacgccgtgccga
gaaatgttgatcacaccacaggtcatgagccgggctgccaacctgaaaaaccatttccca
gccgctgaagaaatgctcaccaaaattgctggtggcatcgccgtggagggtatggaatct
ctggcaccccttctggtggaccacatggttccgttgctttccctcctgccggaatcctcg
attgcactggtcatggaaccagaacgagtgcgcgcccgtgcacaggatctgaatgccact
aacgcggagttccttgctgccgcgtgggcttcggcctcagatggcgccacagccccactg
gatttgaacaccgccagctcggagcgcaagctcgctagcggcgattttgcctcgctttcc
gaaacccttgagcacgccaaggccgcgaaggtgtcctggtgggcgctgaccgccatgggc
gaggatgaagagctggaagtcggcgcgtcaaccattcgcatccctgcgcgggaaccacac
ggctatcaaggcgacattgaggcgatgatggaattcatcgcttcacgagttaaagatcag
tggcgttttgttgtggccaccgacggacctggtccagcgcaacggctatctgagctgttc
gctgaattcagcattccagcccaccgagttgaaacccttgaccaggcgccaaccgcggga
cttatcgaaatcacccaagcgaccgctgggcgtggatttgtctttgaagagctcaagctt
gggctactcaccgaagccgaccttttgggtcgttcaagcgcgtacccaaatcgtaaggga
cgcaagctcaccgcaaagcgcaagcgcaatgccgtagatccactcagcctgcaggcaggg
gacttcatcgtccatgagcagcacggcatcggtaaatttgttgaattgatggctcgcaaa
gttgcaggttcaggcaaagacgccaaacgagaatacttggtcgttgaatacgcctcctcc
aaacgtggcgcaccgggggaccgactattcgttcccacagaccagctgcacatggttacc
cgatatgtcggcggcgaagcacccaccctgtccaagatgggtggctcagactgggccagc
accaagtccaaagcgcgcaaagcggtcaaggagatcgctggcgatttgatcaagctgtat
tcggcacgcatggccagccgtgggcacgccttcggccaagacactccttggcaacatgaa
ctcgaagaggcctttgccttcatcgaaactcctgaccagctaaccgcaatcaatgaggtt
aagtcggatatggaaaaggaaatcccgatggatcggttgatttctggtgacgtgggcttc
ggcaaaaccgaaattgctgtccgtgcagccttcaaggccgttcaagactcaaagcaggtt
gcggtactggtaccgaccacattgcttgcctcccagcatcagcagacgttcaccgaacgc
tattcgggattcccggttcgagtgaaaacactgtcacgtttccagacggccaaggaatcc
aaggagatcatggccggactgcaagatggcagtgttgatatcgtcatcggtacccaccgt
ttgctctccaaaaacgttcagttcaaaaatcttggccttgtcatcatcgatgaggaacag
cgttttggtgttgagcacaaggaagaacttaagaagctgcgcactaacgtggatgtgctg
gcaatgagcgccacgccaattccgcgtaccttggaaatgtcgctcaccggaatccgtgag
acctccactttggccacgccaccggaagaacgtcatccggtcttgacctacgttggcccg
cgaagcgacaagcagatttcggcagccatcaagcgtgaactcatgcgcgatgggcaggtc
ttctttgtccacaaccgagtttcatccattgagcgagtggcagcagaacttcgcgagctg
gcccctgaagcgcgcattgaagtggcgcatggcaagatgagtgagtcacgactggaacgg
atcatccaggacttctgggaaaagaaatttgatgttctggtctccaccaccattattgaa
accggcttggacatttccaacgccaacactttgattgtggaccgggccaacaactatggt
ctctcccaattgcaccagcttcgtggacgagtcggtcgtggccgtgagcgtgcctacgct
tacttcctgtgggatgtagaaaagccgttgggcgagattgctcttgaacgcctcaaagcg
gtagcagcgcacaatgagttgggttccggctaccaactagcgatgaaggacttggagctg
cgtggagctggcaatctacttggtggagagcagtccggacatattgctggggttggcttt
gatttgtacctgcgcctcgtgggcgaggctgtcgccgactacaagggtgagggtgaagaa
gaagccaccgagatgaaaatcgacctgccggtcaacgctcacctaccgcacgactatgtt
cccggtgaacgtctgcgcttggaggcttaccgcaatatcgccgccgcggaaaccgacgag
gcgctgaccgaggtgcgtgaagaactggtggaccgctacggaaagctaccgcaaccggtg
gagaacctgatgcgggtagcagcactgcgcatccgtgctcgggctgtcgggctcaatgac
attcagcagattggcaacaacatcaaggtgtcaccagccaagattgaagacctaccagcg
tcacgacaagtccgactggaacgcctgtacccaggggcagcaaataagccagcgcttaac
tcgatcttcattccaaagccaagaacgtcacctattggcgggcgcgacctagtggacgaa
gaaattttggagtgggccgaaaagctgctctacgcgatcttcgaaccaaccccggcaccg
gctacgaaataa
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