Trichlorobacter lovleyi: Glov_0700
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Entry
Glov_0700 CDS
T00708
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
glo
Trichlorobacter lovleyi
Pathway
glo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Glov_0700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glo03400
]
Glov_0700
Enzymes [BR:
glo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Glov_0700
DNA repair and recombination proteins [BR:
glo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Glov_0700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACD94426
UniProt:
B3E412
LinkDB
All DBs
Position
complement(709791..713288)
Genome browser
AA seq
1165 aa
AA seq
DB search
MPEPTPSQRCPVAAIARLAEQLRHGAHPATLTGLAGSAPALAVAELSRLLPRQIVVIAAD
QAAADELTRELLFFNAVNVSPFPAWDTCPFEAASPHPDISGARLETLQRLLQGSPCTVVA
PVAALMQRIIPRSLLTGASCAIKPGDEPDREALLEGLVRMGYTNCPLVEERGSFAVRGGI
LDIFPPSLPRPVRIEFFGDTVETLRSFDPLNQRSLESLTCLNLLPSRELILSPAALQEFI
PRLKERADQLDIPADRRRQLVSELQGAGYPPGVEFLQPLFHPGLQSFFAYLNNPLLVLQE
PDLLRQAAQQHQTDVTSGVQKAAAEERLHPAPYQLYLTQDEFSQLLDQQQTLALRRLTVA
GESSADLVQIRSEDNSDLRISMARDQQHLLGPLAERLKQWHAANWRTLVVCHHPSQAERL
QELLTPYGISCSLGTTDPFGPEAPSVHTDLLLVIGELSRGFRLPESKLAVIAEEELFGKR
TRRKSGVTALRTKQILASLAELKPGDAMVHVDHGIGIYRGLQHLKTGAVEGDFLLLEYAG
NDKLYLPIDRLGLVQRYAGGEGATPAPARLGGPGWEKTRSKARKNIEELAAELLEVYAKR
QASQGYSFSPPDELFREFEATFPWEETPDQLSAIQDVLGDMQHSRPMDRLVCGDVGYGKT
EVALRAAFKAVLDGKQVALLVPTTILAQQHFETFSTRLKDYPVSIEMLSRFRSVKEQKIS
LERLKEGKLDIIIGTHRLLQKDVSFKDLGLLIVDEEQRFGVKDKERLKQYRASVDIMTLT
ATPIPRTLHLSMLGIRDLSIIDTPPVDRQAIKTVVARDTDDLIRDAITRELERGGQVFYV
HNRAHSIGIVAERLRQLVPQARISVAHGQMEEKELEKVMLTFMHGQSDLLLTTTIIESGL
DIPRANTMLVDRADTFGLSQLYQLRGRIGRSTVKSYAYLLIPGQGSITQDARERLKIIQD
ISELGAGFRIATHDLELRGAGDMLGPRQSGTVADIGFELYTQMLEEAIAGLKGEDLEERC
EPEINLAIAAFIPETYIPDTNQRLVLYKRLVQADSNDDVAEVVSEMHDRYGRPPLAAQTL
ARIMELRIRLKQLKILKVDADGKRLCLAFHPRTAVSPETLINLIRTAPAIYQFTPDHRLL
VTLPVNSSNNDTLEALASALTLLGA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacccacaccatcacaacgctgccctgtagcggctatagcacgcctggctgaa
caactgcggcatggcgcacatccggcaaccctgaccgggctggccggttcagctcctgcc
ctggcagttgctgaactttcccggcttctcccgcgccagatcgttgtcattgcggctgat
caggcagccgccgacgaactgacccgtgagctgctgtttttcaacgccgttaacgtcagt
ccctttccggcctgggatacctgcccgttcgaggccgcctcgccccaccccgacatcagt
ggagcccggctggagacattacaacgcctgctgcagggcagtccctgcaccgttgtcgcg
ccggtggctgccctgatgcagcggatcatcccccgctcccttctgaccggggcgtcctgt
gccatcaaaccgggtgatgagcctgaccgcgaagccctgctggaagggctggttaggatg
ggttataccaactgccctctggtggaagagcggggcagctttgccgtgcggggaggaatt
cttgacatcttccctcccagcttgccacggccggtccggattgaattctttggcgacacc
gtcgagaccctgcgcagctttgatccgctgaaccagcgttcgctggaatcactcacctgc
ctgaacctgctgccttcacgggaactgatactttccccggcagcgttacaggagtttatc
ccgcgcctgaaagaacgcgccgaccagcttgatatcccggccgaccggcgtcgccagctg
gtgtccgagttgcagggggccggctatccccctggcgtcgaatttctccagccgctcttc
catcccggcctgcaatcatttttcgcctacctgaacaacccgctgctggtactgcaggaa
cctgatctgttacgccaagcagcccaacagcatcagacggacgttacaagcggcgtccag
aaagcagcggccgaagaacggctgcacccagccccgtaccagctgtacctgacccaggac
gagttttcccagctgcttgaccaacagcagacgcttgccttaaggcgtctgactgttgcc
ggcgaaagcagcgccgatctggtacagatcaggtctgaagacaactcggatctgcggatc
agcatggcgcgagatcaacagcatctgctcggcccgctggcggaacgtctgaagcagtgg
catgccgcgaactggcggaccctggtggtctgtcaccatcccagccaggccgaacggctg
caggagctgctcaccccctacggcatcagctgcagcctcggcaccaccgaccccttcggt
ccggaagcgccctccgttcatactgacctgctgttggtaatcggtgaactgtcccgtggt
ttcaggctgccggaatcaaagctggcggttattgccgaggaagagctgttcggcaagcgg
acccgccgcaagagtggtgtcacggccctgcgtaccaaacagatcctggcctcgctggca
gaactcaaaccgggtgatgccatggtccacgttgatcacggcatcggcatctaccgcggt
ctgcagcacctgaagaccggtgcggtcgaaggcgacttcctcctgttggagtatgcgggc
aacgacaagctctatctgccgattgaccggctgggactggtgcaacgctatgctggcggc
gaaggagcgacaccagcaccggccagactgggaggtcccggctgggaaaaaactcgcagc
aaggcccgtaaaaacatcgaagagctggccgccgagctgctggaggtttacgccaagcgt
caggccagccagggctacagcttttcgccccctgatgagctgttcagagagtttgaggcc
accttcccctgggaggagaccccggaccagctttctgccattcaggatgtgctgggcgac
atgcagcactcccgcccgatggaccgcctggtttgtggcgatgtcggctacggcaagacg
gaagtggcgctgcgggcggccttcaaagcggtgctggacggcaaacaggttgccctgctg
gtccccaccaccatcctggcccagcagcatttcgagaccttcagcacgcgcctgaaggat
tacccggtttccattgaaatgctctcccgtttccgcagtgtaaaagaacaaaagatcagc
ctggagcggcttaaggagggcaagctggatattatcatcggcacccaccgcctgctgcag
aaagatgtcagcttcaaggacctggggctattgatcgtggacgaagaacagcgtttcggg
gtcaaggacaaggaacggctcaagcagtaccgggccagcgttgatatcatgaccctgacc
gccacgccgatcccacgcaccctgcacctctccatgctgggcatccgcgacctctcgatc
atcgacaccccgccggttgaccgccaggcgatcaagaccgtggtggcacgggataccgat
gacctgatcagggatgccatcacccgtgagctggagcggggtggccaggtcttttatgtc
cataaccgggcccactccatcggcattgtggcagagcggttgcggcaactggtaccccag
gctcggatcagtgtggcccacggccagatggaggaaaaagaactggaaaaggtaatgctc
accttcatgcatggccagagcgacctgctgttgacgacaacgatcatcgaatccgggctt
gatattccccgtgccaacaccatgctggtggaccgggccgacaccttcggactgtcgcag
ctctaccagctgaggggccggatcggccgttccacggtcaaaagctacgcctacctgctg
atccccgggcagggcagcattactcaggacgcacgggaacgtttgaagatcatacaggac
atttccgagctgggggccggcttcagaatcgccacccacgaccttgaactgcgcggggcc
ggtgacatgctgggaccgcgccagtccggcaccgttgctgacatcggctttgagctgtac
acccagatgctggaagaggcgatcgccggactaaagggcgaagaccttgaggagcgctgt
gaaccggagattaatctggcgattgccgcctttatccctgaaacctacatcccggatacc
aaccagcggctggtcttgtacaagcgcctggtacaggccgattcaaatgacgatgtggca
gaggtggtcagcgagatgcatgatcgctatggccgtcctccgctggcggcccagaccctg
gcccggatcatggagctgcgcatcagactcaaacagcttaagattctaaaggttgacgcc
gacggcaagcgcctctgcctggcttttcaccccagaaccgctgtcagcccggagaccctg
atcaacctgatccgtactgcaccggccatctaccagtttactccggaccaccgcctccta
gtaaccttaccggtgaacagctcaaacaacgatacccttgaggccctggcttccgcactc
acactgcttggcgcctga
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