Trichlorobacter lovleyi: Glov_1340
Help
Entry
Glov_1340 CDS
T00708
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
glo
Trichlorobacter lovleyi
Pathway
glo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
glo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Glov_1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
glo03021
]
Glov_1340
03400 DNA repair and recombination proteins [BR:
glo03400
]
Glov_1340
Enzymes [BR:
glo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Glov_1340
Transcription machinery [BR:
glo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Glov_1340
DNA repair and recombination proteins [BR:
glo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Glov_1340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACD95061
UniProt:
B3E7S9
LinkDB
All DBs
Position
1386284..1390441
Genome browser
AA seq
1385 aa
AA seq
DB search
MEDYFTGSFFDKPKDPLHFSAIRISISSPEKIRERSFGEVKKPETINYRTFKPERDGLFC
AKIFGPTKDYECNCGKYKRMKHRGIICEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLK
SLPSRIGNLLDITLKDLERVLYFEAFAITDPGTTPLKFCEVLSEDKFLKAQEEYGIDAFE
GGMGAEAVRKCLQALELDELAVQLRMEMMESTSEAKRKKVAKRLKVVEAFKQSGNKPEWM
ILECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLCELQAPEVIIRNEKR
MLQEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQ
VETRVLMMSTNNILSPAHGKPIIVPSQDMVLGTYYMTRERIGAKGERTTFASPEEVRIAF
DHGEVDMQARVKVRMIDAPDNPDEKPQLVDTTVGRIILREVLPPQVPFSAINKVMNKKEL
SNLIDTCYRLAGNKETVILADRLKETGFRYANLAGISICIDDMVIPEGKQAIIDRANEEV
QEIQNQYTEGLITDGERYNKVIDIWAKSTEEIAKEMLGNLSKEIVVDSDGKEVEIPSFNA
IHMMADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVAQDAIITEDDCGTLDGLTVSSLTEGGEVIEHIGDRILG
RVALDDIHDPITDEILVEANQEIDENLVKKIEDAGLEKVKMRSVLTCQSKRGICAKCYGR
DLARGHIVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRAAEQTSLEARYEGLVKYI
NLHTVVNAEGFHIVMSRNGEVAVVDETGRERERYGVVYGAKLKIAPEGSVKAGETLAEWD
PYTMPILTEVGGRVKFGDIIEGVTMEEKLDDVTGLSRKEIVETKDSDKRPRIAIKDAGES
GGTIGRYYLPVGAIINVTEDAVICGGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKD
FAVITEIDGKVNFGKDSKGKRKVVVTPELGEPKEYLIPKGKHISVHEGDYVRAGEPLMDG
SSNPHDILRVLGVKELAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEVGDTN
LLIDDQVERYVFEEENAKAFAEGKRPATAEPLLLGITKASLSTESFISAASFQETTKVLT
QAAIEGKVDALRGLKENVIMGRLIPAGTGIPRYRHLRLHVEEQTGEQAVTQLDAAPDLDA
EQQAA
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
gtggaagattatttcacaggaagcttcttcgataaaccaaaagatcccctgcatttttca
gctattcgtatctccatctcctcgccggagaagattcgggagcgttcctttggtgaagtg
aaaaagccggagacgattaactatcggaccttcaagccggagcgtgatggcttgttctgt
gccaaaatatttggaccgacaaaggattacgagtgtaactgcggcaaatataaacgcatg
aagcaccgcggtattatctgcgagaagtgcggcgtcgaggttattccctccaaggtgcgc
cgtgaacggcttggacatattgatcttgctaccccggtggcgcatatctggttcctcaag
tcgctaccttccaggatcggaaatctgcttgatattactctcaaggatctcgagcgggta
ctgtatttcgaggcttttgccatcactgaccccggtacgacgccactcaagttctgcgag
gtgttgtcagaggataagtttctcaaggcccaggaagagtatggcattgatgcctttgaa
ggcggcatgggtgcagaagccgtacggaagtgtctgcaggcgttggagctcgatgagctg
gcagttcaactgcggatggagatgatggagtccaccagcgaggccaagcgcaagaaggtg
gccaagcgtctcaaggtagtagaggccttcaagcagtctggcaacaagcccgaatggatg
atcctggaatgtattccggtattgccaccggaattgcgcccactggtgccgctggatggc
ggacgttttgccacctctgatctgaacgacctctatcgtcgtgttatcaaccggaataac
cgccttaaacgtctttgtgaactgcaggccccggaggtgatcatccgtaacgaaaagcgg
atgctgcaggaggcggttgacgccctgtttgacaacggtcgccgtggccgcgctattgcc
ggccccaacaagcgtccgctcaagtcactgtctgacatgctcaagggtaaatccggccgt
ttccgtcagaacctgttgggcaagcgggtcgactactccggccgttccgttattgttgtc
ggtcctgagctgaagttgcaccagtgcggtctgcctaagaaaatggctctggagctgttc
aagccgtttatttataacaagctcgaagagcgtggctatgttaccactatcaagagtgcc
aagaagatggtggaaaaggaacgtcccgaagtatgggatgtactggaagaagtaatccgg
gaacatccggtcatgttgaaccgtgcaccaaccctgcacagactcggtatacaggccttt
gaaccggttttgatcgaaggtaaggccattcagctgcacccactggtctgtactgcattt
aacgccgactttgacggtgaccagatggccgtacacctgccactttccattgaaagtcag
gtggaaaccagggtgttgatgatgtccaccaacaacatcctctccccggctcacggcaag
ccgattatcgtgccctcgcaggatatggttcttggaacctattacatgaccagggagcgg
attggcgctaaaggcgagaggacgacttttgcctctcccgaagaagtgcgtatcgctttt
gaccatggtgaggttgatatgcaggcacgggtcaaggtgcggatgattgatgcacctgac
aatccggatgagaagccgcaactggttgataccaccgtcggcaggatcattctgcgggag
gtgttgcctccacaggttcctttctcggcaatcaacaaggtgatgaacaagaaggaactc
tcaaacctgattgatacctgctaccgtctggccggcaacaaggaaacggttattctggct
gaccgtctgaaggaaaccggtttccgctatgcaaacctggctggtatctcaatctgtatc
gatgatatggtcattcctgaaggtaaacaggccatcattgacagggccaatgaagaggtc
caggagattcaaaaccagtacaccgaaggtctgattaccgatggtgaacgctacaacaag
gttattgatatctgggccaaatctactgaagagatcgccaaggagatgttgggcaacctc
tccaaggagatcgttgttgacagtgatggtaaagaggttgaaatcccctcctttaatgcc
attcacatgatggctgactcaggcgcacggggttccgcacagcagatccgtcagttggcc
ggtatgcggggcttgatggcaaaaccgtccggcgagattattgaaactccgattaccgca
aacttccgtgagggtctgaccgtgttgcagtacttcatttcaacccacggtgcacggaag
ggtcttgccgataccgcgttgaaaacggcaaactccggttacctgacccgtcgtctggtt
gacgtggcccaggacgcgatcattactgaagatgattgcggtactctggacggcctgacg
gtcagctcgctgaccgagggtggtgaagttattgagcatatcggtgaccgtattcttggt
cgggttgctcttgatgatatccatgacccgattaccgacgagattctggtggaggcaaac
caggagattgacgaaaatctggttaagaaaatcgaagatgcaggtcttgagaaggtcaag
atgcgctcagtgctcacctgccagagtaaacgtggcatctgtgccaagtgttacggacgc
gaccttgcccgtgggcatatcgttaacatgggtgaggcagttggtgttatcgctgcccag
tctatcggcgaacctggtacccagctgaccatgcgtaccttccacattggtggtactgca
tcccgggctgctgaacagacttcacttgaggctcgctacgagggcttggtcaaatacatt
aatctgcataccgtagtcaatgcagagggtttccacattgtcatgagccgtaacggtgag
gttgccgtggtggatgagaccggtcgtgaacgtgaacggtacggtgttgtttatggcgca
aagctgaagattgctccggagggttcagtcaaggcaggtgagacacttgctgaatgggat
ccatataccatgccaattctgactgaggttggcggccgggttaagttcggtgacattatt
gaaggtgtcactatggaagagaagctggatgatgtcacaggcctctcccgtaaagagatc
gtagaaaccaaggactcggataaacggccgagaattgccatcaaagatgccggagagtcc
ggcggtaccattggtcgttactatctacctgttggtgccattattaacgtgactgaagat
gcggtcatctgtggtggtgatatcattgccaagattcctcgtgaaacgaccaaaaccaag
gatattaccggtggtcttccgcgggttgcagagttgttcgaagcacggaaaccgaaagat
tttgctgttattaccgagattgacggaaaggttaatttcggtaaagactctaaaggcaag
cgaaaagtggtggttacccctgagcttggtgagccgaaagagtatctgattccaaaaggt
aagcatatcagtgtacacgaaggtgattatgttcgtgccggggaaccgttgatggatggc
tcgtcaaaccctcatgatattctgcgcgttcttggcgtcaaggagcttgccaaatacctt
gtcgatgaagtgcaggaagtctatcgtctgcaaggtgttaagattaacgataagcatatt
gaggttattgtacgacagatgttgcgtcgtgtcagaatcaaagaggttggcgacaccaac
ctgctgatcgatgaccaggttgaacgctatgtctttgaagaagaaaatgctaaggctttt
gccgaagggaagcgtcctgcaacagcagagcctcttttgcttggtattaccaaggcctcg
ctctcaacagagtcattcatctcagcagcatctttccaggagacaacgaaggtactgacg
caggccgctatcgaaggcaaagttgatgccctgcgcggacttaaagagaacgtcattatg
ggacggttgataccagctggaaccggtataccccgttatcgtcaccttcgtctgcatgtt
gaggaacaaaccggtgagcaggctgtaacccagctggatgcagcgccggatttggatgct
gaacagcaggcagcatag
DBGET
integrated database retrieval system
