Gloeocapsa sp. PCC 7428: Glo7428_1261
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Entry
Glo7428_1261 CDS
T02400
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
glp
Gloeocapsa sp. PCC 7428
Pathway
glp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Glo7428_1261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glp03019
]
Glo7428_1261
03400 DNA repair and recombination proteins [BR:
glp03400
]
Glo7428_1261
Enzymes [BR:
glp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Glo7428_1261
Messenger RNA biogenesis [BR:
glp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Glo7428_1261
DNA repair and recombination proteins [BR:
glp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Glo7428_1261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
Fe_hydrogense_Fe-S_bd
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFZ29833
UniProt:
K9XBF3
LinkDB
All DBs
Position
1384496..1385917
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AA seq
473 aa
AA seq
DB search
MNSNAIATHTLRNTLQKIWGYPEFRQPQEEIIRSVLSQQDTLIVMPTGGGKSICFQLPAL
LQLGLTLVVSPLVALMENQVKELRDRQLPAALLHSELPTYQRKQILQQLERQQLKLLYLS
PETLFSAPVWERLCQPQLQINSLILDEAHCLVQWGDTFRPAYRRLGMVRPALLQSKPKET
KIAIAAFTATADPTAQTTIQRVLQLQQPQIFRQNPYRPNLHLKVQTVWTPRGRKQQLLKF
IQAKLQQAGLVYVRTRRDSESLAAWLNQQGYLTAAYHAGLSPEERREIETDWLSGKIPFV
ICTSAFGMGINKPDVRWVIHFHAPLLLSEYVQEIGRAGRDGKPSIALTLVSEPTGWLDPE
DKQRQEFFTQKLRSQYTKAQQLAKKLPKQGKIPRDAESAIALALLHSNGQLEWQDPFHYI
IHQTRLQSPRKLNFGHQINEYLNIRSCRWRFLLSAFGFDQAEFKCGHCDRCTQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgcgatcgccacccacacactacgaaacaccttacaaaaaatttgggga
tatccagaattccgccaaccccaggaagaaattattcgtagtgtattgtcgcagcaagac
accctgatcgttatgcccaccggtgggggaaaatcaatttgctttcaacttcctgcatta
cttcagcttgggctaacacttgtcgtgtcaccgttagtcgctttgatggaaaatcaagtc
aaagaattacgcgatcgccaattacctgctgctttgttacacagcgaattaccaacatat
caacgcaaacaaatcttacagcaactcgaacgacagcagctaaagttactatacctctca
cccgaaacactttttagcgcacctgtatgggaacgcttgtgccaaccgcaactgcaaatt
aacagcctgattcttgatgaagcgcattgtttagtacagtggggagatacgtttcgccct
gcataccgccgtttaggtatggtgcgacctgcactgctacaatcaaaacccaaagaaaca
aaaatcgcgatcgccgcctttaccgccaccgccgatccaacggcacaaaccacgattcaa
cgagttttacaactccaacagccccaaatttttcgccaaaatccctatcgtccaaatctt
catctcaaagtgcaaacggtatggacaccacgcggacgaaaacaacagttattaaaattt
attcaagctaaactccaacaagctggattagtctacgtccgcacgcgcagagatagtgaa
agcctcgccgcatggttaaaccaacaaggttatcttactgctgcttatcatgctggatta
agcccagaagaacgccgagaaattgagactgactggttaagcggtaaaatcccttttgtg
atttgcacctcagcctttggcatgggaattaataaacctgatgttcgttgggttattcac
tttcatgcaccgttgctactttcagaatatgtccaagaaattggacgcgcagggcgtgat
ggtaaaccaagcatcgcgttaacccttgtaagtgaaccaacaggatggctagatcctgaa
gataaacagcgtcaagaattttttacgcaaaaactgcgatcgcaatatactaaagctcag
caattagctaaaaagttacctaaacaaggtaaaattccgcgagatgctgaaagtgcgatc
gcccttgccctgcttcacagtaatggtcaactcgaatggcaagaccccttccattacatt
attcatcaaacacgcttacaatctccacgaaaacttaattttggtcatcaaatcaacgaa
tatcttaatatccgttcttgtcgctggcgatttctcttaagtgcgtttggctttgaccaa
gcagaatttaagtgtggacattgcgatcgctgcactcaataa
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