Gloeocapsa sp. PCC 7428: Glo7428_1979
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Entry
Glo7428_1979 CDS
T02400
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
glp
Gloeocapsa sp. PCC 7428
Pathway
glp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Glo7428_1979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glp03400
]
Glo7428_1979
Enzymes [BR:
glp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Glo7428_1979
DNA repair and recombination proteins [BR:
glp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Glo7428_1979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFZ30526
UniProt:
K9XEM4
LinkDB
All DBs
Position
complement(2230571..2234158)
Genome browser
AA seq
1195 aa
AA seq
DB search
MAFFSIVRALGRSPLTTEILAKLERQRVCRLNGIPRLPKGLVASALAQEAQSHLLVVCST
LEEAGRWSAQLEAMGWQTTHFYPTSEASPYEPFDPETEMTWGQMQVLADLIRGNESSVTG
NGQEQQLPITAVPPGKPQAACGGFANYHSPMAIVATQAALQPHLPPLEAFQPYCLNVTQG
MELDLDAFGDKLAQLGYERVPLVETEGQWSRRGDIVDVFPVASELPVRLEWFGDEIEQIR
EFDPATQRSRSTNGSALDKIDSLVLTPTTFAPIIVSALADKKQQVNTYLSPEEQEQFETN
QILEGSRRFLGLAFDKPASLLDYLPENTLIAIDEIEQCQAHSDRACENAEEQHAALSHLP
RIHRAFEDSLATASNFRQLHLSELVVEENSAPTAINLASRPVPVTPHQFGKIAETIRNER
DRGFSVWLVSAQPSRSVSLLQEHDCPAQFIPNPRDFQAIDKLQISHTPVALKYSGLAELE
GFILPTFRLAVVTDREFFGQHTLATPSYVRKRRQAASKQVDLNKLRPGDYVVHRNHGVGK
FLKLESLTLNNETREYIVIQYADGLLRVAADQLGSLSRFRSTTESPPELNKMSGKAWANT
KNRVRKAIKKLAVDLLKLYAARSQQQGLAYPPDQPWQEELEDSFPYQPTTDQLKAVQDVK
RDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERF
APYPIQVGLLNRFRTAEERRDIQRRLTTGELDVVVGTHQLLGKGVNFRDLGLLVVDEEQR
FGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKTHLAPY
DSESVRSAIRQELDRGGQVFYVVPRVDGIEETAANLREMIPGGRIAIAHGQMDEGELEST
MLTFSNGEADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAW
LFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFD
LYMEMLEEAIREIRGQEIPSVDDTQIDLNLTAFIPADYITDMDQKMSAYRAVAAAKTKEE
LVQIAAEWSDRYGTIPSGANQLLRVMELKQIAKSLGFSRIKPEGKQHIILETPMEEPAWN
LLAANLPEHLRSRFVYSPGKVTVRGLGVLSAHQQLENLIDFLSKMQGALPEPVLT
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggcatttttttccattgttcgtgctttggggcgatcgccgctcacaacagaaatttta
gctaaacttgagcggcagcgcgtctgtcgtttaaacggcattcctcgccttcctaaagga
ttggtggcttcagctttggcacaagaggcgcaatcgcatcttttggttgtgtgttccacc
ctcgaagaagccggacgctggagtgcacaactagaagcaatgggttggcaaacaacgcat
ttttatcctacttctgaagcttctccctacgaaccttttgaccctgaaacggaaatgacg
tggggacaaatgcaggttttggcagatttaattagaggtaatgagtcatcggtaacaggt
aatgggcaagaacaacaattaccaattaccgccgttccgcctgggaaaccacaggcggcg
tgcggcggcttcgccaattaccactcaccaatggcgattgttgccactcaggcggcgttg
caaccgcacttaccacctctagaagcgtttcagccgtattgtttgaatgttacgcagggg
atggagttagatttagatgcttttggagataaactagcgcagttaggctacgaacgcgta
ccgctcgtagaaactgaaggacaatggagtcggcgcggagatattgtcgatgtgtttccg
gtggcttccgagttgccagtacgtttagagtggttcggggatgaaattgaacaaattcgt
gaatttgaccctgcaacacagcgatcgcgcagtactaatggcagcgctttagataaaatc
gattccctagtactcactccgacaacttttgcaccgattatcgtttccgccctagctgac
aagaaacaacaagtcaatacctacttatcaccagaagaacaagaacaatttgagacaaat
caaatattagaaggtagccgccgcttcttaggtttagccttcgacaagcccgcatcttta
cttgactatttacccgaaaatacgctaattgcgattgatgagattgaacaatgtcaagca
catagcgatcgcgcttgtgaaaacgcagaagaacaacacgccgcactcagtcatctaccc
cgcattcatcgcgcttttgaagactctttagcaaccgccagcaactttcgccaactccat
ctttcagaacttgtcgtagaagaaaattccgcacctacagccatcaatcttgcgagtcgt
ccagtacccgtgacaccgcatcaatttggcaagattgccgaaacgattcgtaatgaacgc
gatcgcggtttttcggtgtggttagtttcggcgcagccttcgcgttctgtttctcttcta
caagaacacgattgtcctgcacaatttattcctaaccctcgcgatttccaagcaattgat
aagctgcaaatatcacatacgccggtagccctaaaatactccggcttggcagaactcgaa
gggtttatcttaccaactttccgcctcgcagttgtgacagatcgcgagtttttcggtcag
cacacactcgcaacaccaagttatgtgcgcaagcgccgtcaagctgcatcaaagcaagtt
gatttaaacaagttgcgccctggcgattatgttgtccatcgcaatcatggtgtaggtaaa
ttcctcaaactcgaaagtttaacgctgaataacgaaacccgcgaatatattgttattcaa
tacgcagatggtttattgcgcgtcgccgccgatcaactcggatcgttgtcgcgatttcgc
agtaccaccgagtcgcccccagaactcaacaaaatgtctggcaaagcctgggcgaatact
aaaaatcgcgttcgcaaagcaattaagaaattagccgtagatttattgaaattgtacgca
gcgcgatcgcaacaacaaggcttagcatatccccccgatcaaccttggcaagaagaactt
gaagactcatttccgtaccaaccgacaacagatcagctaaaagcggtacaagatgttaaa
cgcgatatggaaagcgatcgcccgatggatcgtctagtatgtggtgatgtcggtttcggg
aagactgaagtagctatccgcgccatctttaaagctgtaaccgcaggtaaacaagtcgcg
cttctcgccccaacgacgattcttacacaacaacactatcacacgctcaaagaacgtttt
gccccttacccaattcaagtgggtttactcaaccgcttccgcaccgccgaagaacgtcgc
gatattcaacgtcgcctcactacaggtgaattagatgttgttgtgggtacgcatcagcta
cttggtaagggcgtgaacttccgcgatttaggtttactcgtggtagacgaagaacagcgc
tttggtgtcaatcaaaaagagaaaatcaaatcactcaaaacgcaagttgacgttttaacg
ctgagtgcgactccgattccacgcacattatatatgtcgctgtcgggaattcgcgagatg
agtttaattacaacaccaccgccaacgcgtcgcccaattaaaacgcatttagcaccgtat
gattcagaatcggtacgcagtgcaattcgccaagaactcgatcgcggcggacaggtgttt
tatgttgttccccgcgtggatggtattgaggaaactgcggcaaatctgcgggaaatgata
ccagggggaagaattgcgatcgctcacggacaaatggatgaaggcgaacttgaatcgaca
atgctcacgtttagcaacggcgaagcggatattttagtttgtaccacaattattgaatcg
ggattagatattcccagagtcaacacaattttaattgaagacgcgcaccgctttggttta
tcgcaactttaccagctacgcggtcgtgtcggtcgtgcggggatacaagctcatgcttgg
ttattttacccgaagcaacgcgccttatccgatgcagcacggcaacgtttacgcgcgatt
caagaatttacgcaactcggttcagggtatcaacttgcaatgcgcgatatggaaattcgc
ggtgtgggtaatttactcggtgcggaacaatccggtcaaatggatgcgatcggttttgat
ttatacatggaaatgcttgaagaagcaattcgcgagattcgcgggcaagaaattccgagt
gttgatgatacgcaaattgacctcaaccttaccgcatttattcccgcagattatatcaca
gatatggatcaaaagatgagtgcctatcgcgctgttgctgctgcaaaaacgaaagaagaa
ttagtacaaattgccgctgagtggagcgatcgctacggtactatccctagtggtgcaaat
caacttctgcgcgtgatggaactcaaacaaatcgctaaatctctgggattcagccgcatt
aaaccggagggtaaacagcacattatcctcgaaactcccatggaagaacctgcatggaac
ttacttgcagcaaacttacccgaacacttgcgatcgcgctttgtgtattcgcctggtaaa
gttactgtacgcggtttaggtgtcctcagcgctcatcaacaactcgaaaacctcatcgat
ttcttaagtaaaatgcaaggcgcacttcccgaacctgtactgacatga
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