Gloeocapsa sp. PCC 7428: Glo7428_3860
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Entry
Glo7428_3860 CDS
T02400
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
glp
Gloeocapsa sp. PCC 7428
Pathway
glp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Glo7428_3860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glp03019
]
Glo7428_3860
03009 Ribosome biogenesis [BR:
glp03009
]
Glo7428_3860
Enzymes [BR:
glp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Glo7428_3860
Messenger RNA biogenesis [BR:
glp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Glo7428_3860
Ribosome biogenesis [BR:
glp03009
]
Prokaryotic type
rRNA helicases
Glo7428_3860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
UvrD-helicase
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFZ32316
UniProt:
K9XJS7
LinkDB
All DBs
Position
complement(4286249..4287643)
Genome browser
AA seq
464 aa
AA seq
DB search
MNFSFESLGLSEARIQHLEKIGFTAATNIQAQAIPHLLAGRDVVGQSQTGTGKTAAFSLP
ILERIDPNQRSVQALILTPTRELAVQVKEAISSFIGEQNIRVVAIYGGQSIDRQMLQLKR
GVQIVVGTPGRVIDLIDRGSLQLNQINWMVLDEADEMLSMGFIDDVEKILQTAPSERQTA
LFSATMPPSIRQLVTKFLRSPVTVTVEQPKAAPTRINQVAYLVPRHWTKARALQPILALE
DPESALIFVRTRKTAAELTNQLQAAGYSVDEYHGDLTQQARERLLMRFRNKQVRWVIATD
IAARGLDVEDLTHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQLIERH
VRQSWKVISIPTRAQIEARHLEKLQGQVQEVLSGERLASFLPIVRDLSNEYDVHAIAAAA
LQMAYDSTRPAWMQSEAAIIEPDKPSTPKPILRSARSQSVSKNS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttcctttgaaagcttgggtctttcagaagcacgtattcaacatttagaaaaa
attggatttacagcagcgacaaatattcaagcgcaagcaattcctcacttacttgcaggg
cgcgatgttgtcggacaatcgcaaactggtaccggaaaaacagccgcattttcattgcca
attttagagcgcattgacccaaatcaaagatcggtgcaagctttaattttgacacccaca
cgcgagttagcggtacaggtaaaagaagcgatttctagctttatcggcgagcaaaatatc
cgtgtagtagcaatttatggcggacaatcgattgaccgacaaatgctacaactcaagcgt
ggcgtgcaaattgttgtcggtacgccagggcgggtgattgatttgatcgatcgcggtagc
ttgcagctaaatcaaattaattggatggtgttagacgaagccgatgaaatgctcagcatg
ggctttattgatgatgtagagaaaattttacagactgcaccaagcgaacggcaaacagct
ttattctctgccacaatgccaccgtcgattcgtcaattagtgacaaagtttttgcgatcg
cccgtaacggtgacagtcgaacagccaaaagcagcaccaacacgcatcaatcaagttgcg
tacttagttccccgccattggacaaaagcacgcgccttacaaccgattttggcgctggaa
gatcccgaatctgctttgatctttgtgcgcactcgaaaaacggcggctgaactgacaaat
cagttacaagcagcaggttacagcgtagacgaatatcacggcgatttaacgcagcaagcg
cgtgaaagactgttaatgcgcttccggaacaagcaagtacgctgggtgattgcgactgat
atcgcggcgcgtggtttagatgtcgaagatttgacgcacgtcatcaactacgacttaccc
gatagtgtcgaaacgtatgtccaccgcatcgggcgaactgggcgtgcaggtaaagaagga
accgcgatttcgttggtacaaccgtttgaacgacgcaaacagcaattgattgagcgtcac
gttcgtcaaagttggaaagtcatttctattccaacgcgagcgcagattgaagcacgtcat
ttagaaaagctgcaaggtcaagtacaagaggttctatcaggagaacgtttagcttcgttc
ttacccattgtgcgcgatttaagcaacgaatacgacgtccacgcgatcgctgctgctgca
ttacagatggcgtatgattcgactcgtcccgcttggatgcagtcagaagctgcaataatc
gaacccgataaaccatcgacaccgaaaccgattttgcgctcagcgcgatcgcaatctgta
tcgaaaaatagctaa
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